Literature DB >> 29764147

The strengths and limitations of effective centroid force models explored by studying isotopic effects in liquid water.

Ying Yuan1, Jicun Li2, Xin-Zheng Li1, Feng Wang2.   

Abstract

The development of effective centroid potentials (ECPs) is explored with both the constrained-centroid and quasi-adiabatic force matching using liquid water as a test system. A trajectory integrated with the ECP is free of statistical noises that would be introduced when the centroid potential is approximated on the fly with a finite number of beads. With the reduced cost of ECP, challenging experimental properties can be studied in the spirit of centroid molecular dynamics. The experimental number density of H2O is 0.38% higher than that of D2O. With the ECP, the H2O number density is predicted to be 0.42% higher, when the dispersion term is not refit. After correction of finite size effects, the diffusion constant of H2O is found to be 21% higher than that of D2O, which is in good agreement with the 29.9% higher diffusivity for H2O observed experimentally. Although the ECP is also able to capture the redshifts of both the OH and OD stretching modes in liquid water, there are a number of properties that a classical simulation with the ECP will not be able to recover. For example, the heat capacities of H2O and D2O are predicted to be almost identical and higher than the experimental values. Such a failure is simply a result of not properly treating quantized vibrational energy levels when the trajectory is propagated with classical mechanics. Several limitations of the ECP based approach without bead population reconstruction are discussed.

Entities:  

Year:  2018        PMID: 29764147      PMCID: PMC5940466          DOI: 10.1063/1.5027433

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  33 in total

1.  Path-integral computation of the low-temperature properties of liquid 4He.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-01-27       Impact factor: 9.161

2.  LAND-map, a linearized approach to nonadiabatic dynamics using the mapping formalism.

Authors:  S Bonella; D F Coker
Journal:  J Chem Phys       Date:  2005-05-15       Impact factor: 3.488

3.  Quantum effects in ice Ih.

Authors:  L Hernández de la Peña; M S Gulam Razul; P G Kusalik
Journal:  J Chem Phys       Date:  2005-10-08       Impact factor: 3.488

4.  Nuclear quantum effects on an enzyme-catalyzed reaction with reaction path potential: proton transfer in triosephosphate isomerase.

Authors:  Mingliang Wang; Zhenyu Lu; Weitao Yang
Journal:  J Chem Phys       Date:  2006-03-28       Impact factor: 3.488

5.  An accurate and simple quantum model for liquid water.

Authors:  Francesco Paesani; Wei Zhang; David A Case; Thomas E Cheatham; Gregory A Voth
Journal:  J Chem Phys       Date:  2006-11-14       Impact factor: 3.488

6.  On the short-time limit of ring polymer molecular dynamics.

Authors:  Bastiaan J Braams; David E Manolopoulos
Journal:  J Chem Phys       Date:  2006-09-28       Impact factor: 3.488

7.  Non-equilibrium dynamics from RPMD and CMD.

Authors:  Ralph Welsch; Kai Song; Qiang Shi; Stuart C Althorpe; Thomas F Miller
Journal:  J Chem Phys       Date:  2016-11-28       Impact factor: 3.488

8.  Quantum Corrections to Classical Molecular Dynamics Simulations of Water and Ice.

Authors:  Qaiser Waheed; Olle Edholm
Journal:  J Chem Theory Comput       Date:  2011-08-15       Impact factor: 6.006

9.  Isotope effects in liquid water by infrared spectroscopy. III. H2O and D2O spectra from 6000 to 0 cm(-1).

Authors:  Jean-Joseph Max; Camille Chapados
Journal:  J Chem Phys       Date:  2009-11-14       Impact factor: 3.488

10.  Many-Body Convergence of the Electrostatic Properties of Water.

Authors:  Gregory R Medders; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2013-10-01       Impact factor: 6.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.