Literature DB >> 36103576

Centroid Molecular Dynamics Can Be Greatly Accelerated through Neural Network Learned Centroid Forces Derived from Path Integral Molecular Dynamics.

Timothy D Loose1, Patrick G Sahrmann1, Gregory A Voth1.   

Abstract

For nearly the past 30 years, centroid molecular dynamics (CMD) has proven to be a viable classical-like phase space formulation for the calculation of quantum dynamical properties. However, calculation of the centroid effective force remains a significant computational cost and limits the ability of CMD to be an efficient approach to study condensed phase quantum dynamics. In this paper, we introduce a neural network-based methodology for first learning the centroid effective force from path integral molecular dynamics data, which is subsequently used as an effective force field to evolve the centroids directly with the CMD algorithm. This method, called machine-learned centroid molecular dynamics (ML-CMD), is faster and far less costly than both standard "on the fly" CMD and ring polymer molecular dynamics (RPMD). The training aspect of ML-CMD is also straightforwardly implemented utilizing the DeepMD software kit. ML-CMD is then applied to two model systems to illustrate the approach: liquid para-hydrogen and water. The results show comparable accuracy to both CMD and RPMD in the estimation of quantum dynamical properties, including the self-diffusion constant and velocity time correlation function, but with significantly reduced overall computational cost.

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Year:  2022        PMID: 36103576      PMCID: PMC9558744          DOI: 10.1021/acs.jctc.2c00706

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.578


  22 in total

1.  Polarizable Force Fields:  History, Test Cases, and Prospects.

Authors:  Arieh Warshel; Mitsunori Kato; Andrei V Pisliakov
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

2.  Fast centroid molecular dynamics: a force-matching approach for the predetermination of the effective centroid forces.

Authors:  Tyler D Hone; Sergei Izvekov; Gregory A Voth
Journal:  J Chem Phys       Date:  2005-02-01       Impact factor: 3.488

3.  Quantum diffusion in liquid water from ring polymer molecular dynamics.

Authors:  Thomas F Miller; David E Manolopoulos
Journal:  J Chem Phys       Date:  2005-10-15       Impact factor: 3.488

4.  Chemical reaction rates from ring polymer molecular dynamics.

Authors:  Ian R Craig; David E Manolopoulos
Journal:  J Chem Phys       Date:  2005-02-22       Impact factor: 3.488

5.  A comparative study of the centroid and ring-polymer molecular dynamics methods for approximating quantum time correlation functions from path integrals.

Authors:  Alejandro Pérez; Mark E Tuckerman; Martin H Müser
Journal:  J Chem Phys       Date:  2009-05-14       Impact factor: 3.488

6.  A quantitative assessment of the accuracy of centroid molecular dynamics for the calculation of the infrared spectrum of liquid water.

Authors:  Francesco Paesani; Gregory A Voth
Journal:  J Chem Phys       Date:  2010-01-07       Impact factor: 3.488

7.  Communication: Relation of centroid molecular dynamics and ring-polymer molecular dynamics to exact quantum dynamics.

Authors:  Timothy J H Hele; Michael J Willatt; Andrea Muolo; Stuart C Althorpe
Journal:  J Chem Phys       Date:  2015-05-21       Impact factor: 3.488

8.  How to remove the spurious resonances from ring polymer molecular dynamics.

Authors:  Mariana Rossi; Michele Ceriotti; David E Manolopoulos
Journal:  J Chem Phys       Date:  2014-06-21       Impact factor: 3.488

9.  Using Machine Learning to Greatly Accelerate Path Integral Ab Initio Molecular Dynamics.

Authors:  Chenghan Li; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-01-04       Impact factor: 6.006

10.  E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials.

Authors:  Simon Batzner; Albert Musaelian; Lixin Sun; Mario Geiger; Jonathan P Mailoa; Mordechai Kornbluth; Nicola Molinari; Tess E Smidt; Boris Kozinsky
Journal:  Nat Commun       Date:  2022-05-04       Impact factor: 17.694

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