Literature DB >> 27267699

Systematic Targeting of Protein-Protein Interactions.

Ashley E Modell1, Sarah L Blosser1, Paramjit S Arora1.   

Abstract

Over the past decade, protein-protein interactions (PPIs) have gone from being neglected as 'undruggable' to being considered attractive targets for the development of therapeutics. Recent advances in computational analysis, fragment-based screening, and molecular design have revealed promising strategies to address the basic molecular recognition challenge: how to target large protein surfaces with specificity. Several systematic and complementary workflows have been developed to yield successful inhibitors of PPIs. Here we review the major contemporary approaches utilized for the discovery of inhibitors and focus on a structure-based workflow, from the selection of a biological target to design.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  fragment-based design; inhibitors; protein-domain mimics; protein–protein interactions; rational design; screening

Mesh:

Substances:

Year:  2016        PMID: 27267699      PMCID: PMC4961577          DOI: 10.1016/j.tips.2016.05.008

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  114 in total

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Journal:  Mol Biosyst       Date:  2013-05

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Authors:  Ophir Shalem; Neville E Sanjana; Feng Zhang
Journal:  Nat Rev Genet       Date:  2015-04-09       Impact factor: 53.242

Review 9.  Alternative modulation of protein-protein interactions by small molecules.

Authors:  Gerhard Fischer; Maxim Rossmann; Marko Hyvönen
Journal:  Curr Opin Biotechnol       Date:  2015-05-15       Impact factor: 9.740

10.  AlphaSpace: Fragment-Centric Topographical Mapping To Target Protein-Protein Interaction Interfaces.

Authors:  David Rooklin; Cheng Wang; Joseph Katigbak; Paramjit S Arora; Yingkai Zhang
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  48 in total

1.  Correlations between secondary structure- and protein-protein interface-mimicry: the interface mimicry hypothesis.

Authors:  Jaru Taechalertpaisarn; Rui-Liang Lyu; Maritess Arancillo; Chen-Ming Lin; Lisa M Perez; Thomas R Ioerger; Kevin Burgess
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Review 2.  Protein-protein interaction modulators: advances, successes and remaining challenges.

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Review 3.  An overview of recent molecular dynamics applications as medicinal chemistry tools for the undruggable site challenge.

Authors:  Ugo Perricone; Maria Rita Gulotta; Jessica Lombino; Barbara Parrino; Stella Cascioferro; Patrizia Diana; Girolamo Cirrincione; Alessandro Padova
Journal:  Medchemcomm       Date:  2018-04-19       Impact factor: 3.597

4.  In-solution enrichment identifies peptide inhibitors of protein-protein interactions.

Authors:  Fayçal Touti; Zachary P Gates; Anupam Bandyopadhyay; Guillaume Lautrette; Bradley L Pentelute
Journal:  Nat Chem Biol       Date:  2019-03-18       Impact factor: 15.040

5.  DLC2 inhibits development of glioma through regulating the expression ratio of TAp73α/TAp73β.

Authors:  Chao Cheng; Suyin Feng; Jiantong Jiao; Weiyi Huang; Jin Huang; Long Wang; Wei Jiang; Chen Jiang; Minchao Dai; Zheng Li; Rui Zhang; Jun Sun; Junfei Shao
Journal:  Am J Cancer Res       Date:  2018-07-01       Impact factor: 6.166

6.  Side-Chain Conformational Preferences Govern Protein-Protein Interactions.

Authors:  Andrew M Watkins; Richard Bonneau; Paramjit S Arora
Journal:  J Am Chem Soc       Date:  2016-08-09       Impact factor: 15.419

Review 7.  Collaborative routes to clarifying the murky waters of aqueous supramolecular chemistry.

Authors:  Paul S Cremer; Amar H Flood; Bruce C Gibb; David L Mobley
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8.  Role of Backbone Dynamics in Modulating the Interactions of Disordered Ligands with the TAZ1 Domain of the CREB-Binding Protein.

Authors:  Rebecca B Berlow; Maria A Martinez-Yamout; H Jane Dyson; Peter E Wright
Journal:  Biochemistry       Date:  2019-02-22       Impact factor: 3.162

9.  Rotamer Libraries for the High-Resolution Design of β-Amino Acid Foldamers.

Authors:  Andrew M Watkins; Timothy W Craven; P Douglas Renfrew; Paramjit S Arora; Richard Bonneau
Journal:  Structure       Date:  2017-10-12       Impact factor: 5.006

Review 10.  Protein Domain Mimics as Modulators of Protein-Protein Interactions.

Authors:  Nicholas Sawyer; Andrew M Watkins; Paramjit S Arora
Journal:  Acc Chem Res       Date:  2017-05-31       Impact factor: 22.384

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