Literature DB >> 19450462

K+/Na+ selectivity in toy cation binding site models is determined by the 'host'.

David L Bostick1, Karunesh Arora, Charles L Brooks.   

Abstract

The macroscopic ion-selective behavior of K(+) channels is mediated by a multitude of physiological factors. However, considering the carbonyl-lined binding site of a conductive K(+) channel as a canonical eightfold coordinated construct can be useful in understanding the principles that correlate the channel's structure with its function. We probe the effects of structure and chemical composition on the K(+)/Na(+) selectivity provided by a variety of simplified droplet-like ion binding site models. We find that when carbonyl- and water-based models capture the qualitative structural features of the K(+) channel binding site, a selective preference for K(+) emerges. Thus our findings suggest that the preference for K(+) over Na(+) exhibited by such models is principally built-in, and is not due to a unique K(+)-selective property of carbonyl functional groups. This suggestion is confirmed by a general thermodynamic assessment, which provides a basis for using simplified models to study the design principles underlying the molecular evolution of K(+) channels.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19450462      PMCID: PMC2712193          DOI: 10.1016/j.bpj.2008.12.3963

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

Review 1.  Ion selectivity in potassium channels.

Authors:  Sergei Yu Noskov; Benoît Roux
Journal:  Biophys Chem       Date:  2006-06-18       Impact factor: 2.352

2.  On the equivalence point for ammonium (de)protonation during its transport through the AmtB channel.

Authors:  David L Bostick; Charles L Brooks
Journal:  Biophys J       Date:  2007-04-13       Impact factor: 4.033

3.  Dipolar correlations and the dielectric permittivity of water.

Authors:  Manu Sharma; Raffaele Resta; Roberto Car
Journal:  Phys Rev Lett       Date:  2007-06-13       Impact factor: 9.161

Review 4.  Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels.

Authors:  Sergei Yu Noskov; Benoît Roux
Journal:  J Gen Physiol       Date:  2007-01-16       Impact factor: 4.086

5.  The predominant role of coordination number in potassium channel selectivity.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

6.  Hydration free energies of monovalent ions in transferable intermolecular potential four point fluctuating charge water: an assessment of simulation methodology and force field performance and transferability.

Authors:  G Lee Warren; Sandeep Patel
Journal:  J Chem Phys       Date:  2007-08-14       Impact factor: 3.488

7.  Statistical determinants of selective ionic complexation: ions in solvent, transport proteins, and other "hosts".

Authors:  David L Bostick; Charles L Brooks
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

8.  Conformational changes in the selectivity filter of the open-state KcsA channel: an energy minimization study.

Authors:  Gennady V Miloshevsky; Peter C Jordan
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

Review 9.  Ionic selectivity revisited: the role of kinetic and equilibrium processes in ion permeation through channels.

Authors:  G Eisenman; R Horn
Journal:  J Membr Biol       Date:  1983       Impact factor: 1.843

10.  K+/Na+ selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints.

Authors:  Sameer Varma; Dubravko Sabo; Susan B Rempe
Journal:  J Mol Biol       Date:  2007-11-28       Impact factor: 5.469

View more
  10 in total

1.  Exploring the ion selectivity properties of a large number of simplified binding site models.

Authors:  Benoît Roux
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

2.  Multibody effects in ion binding and selectivity.

Authors:  Sameer Varma; Susan B Rempe
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

3.  Mapping the importance of four factors in creating monovalent ion selectivity in biological molecules.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

4.  Statistical determinants of selective ionic complexation: ions in solvent, transport proteins, and other "hosts".

Authors:  David L Bostick; Charles L Brooks
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

5.  Probing the thermodynamics of competitive ion binding using minimum energy structures.

Authors:  David M Rogers; Susan B Rempe
Journal:  J Phys Chem B       Date:  2011-07-01       Impact factor: 2.991

6.  Selective complexation of K+ and Na+ in simple polarizable ion-ligating systems.

Authors:  David L Bostick; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

7.  Protein structure and ionic selectivity in calcium channels: selectivity filter size, not shape, matters.

Authors:  Attila Malasics; Dirk Gillespie; Wolfgang Nonner; Douglas Henderson; Bob Eisenberg; Dezso Boda
Journal:  Biochim Biophys Acta       Date:  2009-10-07

8.  Ion selectivity from local configurations of ligands in solutions and ion channels.

Authors:  D Asthagiri; P D Dixit; S Merchant; M E Paulaitis; L R Pratt; S B Rempe; S Varma
Journal:  Chem Phys Lett       Date:  2010-01-18       Impact factor: 2.328

9.  Perspectives on: ion selectivity: design principles for K+ selectivity in membrane transport.

Authors:  Sameer Varma; David M Rogers; Lawrence R Pratt; Susan B Rempe
Journal:  J Gen Physiol       Date:  2011-06       Impact factor: 4.086

10.  An entropic mechanism of generating selective ion binding in macromolecules.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  PLoS Comput Biol       Date:  2013-02-28       Impact factor: 4.475

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.