Literature DB >> 17705614

Hydration free energies of monovalent ions in transferable intermolecular potential four point fluctuating charge water: an assessment of simulation methodology and force field performance and transferability.

G Lee Warren1, Sandeep Patel.   

Abstract

Hydration free energies of nonpolarizable monovalent atomic ions in transferable intermolecular potential four point fluctuating charge (TIP4P-FQ) are computed using several commonly employed ion-water force fields including two complete model sets recently developed for use with the simple water model with four sites and Drude polarizability and TIP4P water models. A simulation methodology is presented which incorporates a number of finite-system free energy corrections within the context of constant pressure molecular dynamics simulations employing the Ewald method and periodic boundary conditions. The agreement of the computed free energies and solvation structures with previously reported results for these models in finite droplet systems indicates good transferability of ion force fields from these water models to TIP4Q-FQ even when ion polarizability is neglected. To assess the performance of the ion models in TIP4P-FQ, we compare with consensus values for single-ion hydration free energies arising from recently improved cluster-pair estimates and a reevaluation of commonly cited, experimentally derived single-ion hydration free energies; we couple the observed consistency of these energies with a justification of the cluster-pair approximation in assigning single-ion hydration free energies to advocate the use of these consensus energies as a benchmark set in the parametrization of future ion force fields.

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Year:  2007        PMID: 17705614     DOI: 10.1063/1.2771550

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  29 in total

1.  Pairwise-additive force fields for selected aqueous monovalent ions from adaptive force matching.

Authors:  Jicun Li; Feng Wang
Journal:  J Chem Phys       Date:  2015-11-21       Impact factor: 3.488

2.  K+/Na+ selectivity in toy cation binding site models is determined by the 'host'.

Authors:  David L Bostick; Karunesh Arora; Charles L Brooks
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

3.  Interfacial structure, thermodynamics, and electrostatics of aqueous methanol solutions via molecular dynamics simulations using charge equilibration models.

Authors:  Sandeep Patel; Yang Zhong; Brad A Bauer; Joseph E Davis
Journal:  J Phys Chem B       Date:  2009-07-09       Impact factor: 2.991

4.  Ion-Hydroxyl Interactions: From High-Level Quantum Benchmarks to Transferable Polarizable Force Fields.

Authors:  Vered Wineman-Fisher; Yasmine Al-Hamdani; Iqbal Addou; Alexandre Tkatchenko; Sameer Varma
Journal:  J Chem Theory Comput       Date:  2019-03-13       Impact factor: 6.006

Review 5.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

6.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
Journal:  Theor Chem Acc       Date:  2009-09       Impact factor: 1.702

7.  Accurate Prediction of the Hydration Free Energies of 20 Salts through Adaptive Force Matching and the Proper Comparison with Experimental References.

Authors:  Jicun Li; Feng Wang
Journal:  J Phys Chem B       Date:  2017-06-29       Impact factor: 2.991

8.  Nonadditive empirical force fields for short-chain linear alcohols: methanol to butanol. Hydration free energetics and Kirkwood-Buff analysis using charge equilibration models.

Authors:  Yang Zhong; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

9.  Temperature dependence and energetics of single ions at the aqueous liquid-vapor interface.

Authors:  Shuching Ou; Sandeep Patel
Journal:  J Phys Chem B       Date:  2013-05-17       Impact factor: 2.991

10.  Computing ion solvation free energies using the dipolar Poisson model.

Authors:  Patrice Koehl; Henri Orland; Marc Delarue
Journal:  J Phys Chem B       Date:  2009-04-30       Impact factor: 2.991

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