Literature DB >> 17227917

Importance of hydration and dynamics on the selectivity of the KcsA and NaK channels.

Sergei Yu Noskov1, Benoît Roux.   

Abstract

Fundamental concepts governing ion selectivity in narrow pores are reviewed and the microscopic factors responsible for the lack of selectivity of the NaK channel, which is structurally similar to the K+-selective KcsA channel, are elucidated on the basis of all-atom molecular dynamics free energy simulations. The results on NaK are contrasted and compared with previous studies of the KcsA channel. Analysis indicates that differences in hydration of the cation in the pore of NaK is at the origin of the lack of selectivity of NaK.

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Year:  2007        PMID: 17227917      PMCID: PMC2154357          DOI: 10.1085/jgp.200609633

Source DB:  PubMed          Journal:  J Gen Physiol        ISSN: 0022-1295            Impact factor:   4.086


  14 in total

1.  Ion permeation mechanism of the potassium channel.

Authors:  J Aqvist; V Luzhkov
Journal:  Nature       Date:  2000-04-20       Impact factor: 49.962

2.  Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution.

Authors:  Y Zhou; J H Morais-Cabral; A Kaufman; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

4.  A gate in the selectivity filter of potassium channels.

Authors:  Simon Bernèche; Benoît Roux
Journal:  Structure       Date:  2005-04       Impact factor: 5.006

Review 5.  Ion selectivity in potassium channels.

Authors:  Sergei Yu Noskov; Benoît Roux
Journal:  Biophys Chem       Date:  2006-06-18       Impact factor: 2.352

6.  Ion selectivity in a semisynthetic K+ channel locked in the conductive conformation.

Authors:  Francis I Valiyaveetil; Manuel Leonetti; Tom W Muir; Roderick Mackinnon
Journal:  Science       Date:  2006-11-10       Impact factor: 47.728

7.  Atomic structure of a Na+- and K+-conducting channel.

Authors:  Ning Shi; Sheng Ye; Amer Alam; Liping Chen; Youxing Jiang
Journal:  Nature       Date:  2006-02-08       Impact factor: 49.962

8.  On the importance of atomic fluctuations, protein flexibility, and solvent in ion permeation.

Authors:  Toby W Allen; O S Andersen; Benoit Roux
Journal:  J Gen Physiol       Date:  2004-12       Impact factor: 4.086

9.  All-atom empirical potential for molecular modeling and dynamics studies of proteins.

Authors:  A D MacKerell; D Bashford; M Bellott; R L Dunbrack; J D Evanseck; M J Field; S Fischer; J Gao; H Guo; S Ha; D Joseph-McCarthy; L Kuchnir; K Kuczera; F T Lau; C Mattos; S Michnick; T Ngo; D T Nguyen; B Prodhom; W E Reiher; B Roux; M Schlenkrich; J C Smith; R Stote; J Straub; M Watanabe; J Wiórkiewicz-Kuczera; D Yin; M Karplus
Journal:  J Phys Chem B       Date:  1998-04-30       Impact factor: 2.991

10.  Negative conductance caused by entry of sodium and cesium ions into the potassium channels of squid axons.

Authors:  F Bezanilla; C M Armstrong
Journal:  J Gen Physiol       Date:  1972-11       Impact factor: 4.086

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  92 in total

1.  A conserved arginine near the filter of Kir1.1 controls Rb/K selectivity.

Authors:  Henry Sackin; Mikheil Nanazashvili; Hui Li; Lawrence G Palmer; D Eric Walters
Journal:  Channels (Austin)       Date:  2010 May-Jun       Impact factor: 2.581

2.  On the selective ion binding hypothesis for potassium channels.

Authors:  Ilsoo Kim; Toby W Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-19       Impact factor: 11.205

3.  Gating at the selectivity filter of ion channels that conduct Na+ and K+ ions.

Authors:  Simone Furini; Carmen Domene
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

4.  Exploring the ion selectivity properties of a large number of simplified binding site models.

Authors:  Benoît Roux
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

5.  Two mechanisms of ion selectivity in protein binding sites.

Authors:  Haibo Yu; Sergei Yu Noskov; Benoît Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-05       Impact factor: 11.205

6.  Assessing the accuracy of approximate treatments of ion hydration based on primitive quasichemical theory.

Authors:  Benoît Roux; Haibo Yu
Journal:  J Chem Phys       Date:  2010-06-21       Impact factor: 3.488

7.  Mapping the importance of four factors in creating monovalent ion selectivity in biological molecules.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

8.  Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites.

Authors:  Mehabaw G Derebe; David B Sauer; Weizhong Zeng; Amer Alam; Ning Shi; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

9.  Many-body effect determines the selectivity for Ca2+ and Mg2+ in proteins.

Authors:  Zhifeng Jing; Chengwen Liu; Rui Qi; Pengyu Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

10.  Structural Dynamics of the Paddle Motif Loop in the Activated Conformation of KvAP Voltage Sensor.

Authors:  Anindita Das; Satyaki Chatterjee; H Raghuraman
Journal:  Biophys J       Date:  2019-08-22       Impact factor: 4.033

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