Literature DB >> 17573427

The predominant role of coordination number in potassium channel selectivity.

Michael Thomas1, Dylan Jayatilaka, Ben Corry.   

Abstract

Potassium channels are exquisitely selective, allowing K+ to pass across cell membranes while blocking other ion types. Here we demonstrate that the number of carbonyl oxygen atoms that surround permeating ions is the most important factor in determining ion selectivity rather than the size of the pore or the strength of the coordinating dipoles. Although the electrostatic properties of the coordinating ligands can lead to Na+ or K+ selectivity at some values of the dipole moment, no significant selectivity arises at the specific value of the dipole moment for carbonyl groups found in potassium channels when the ligands have complete freedom. Rather, we show that the main contribution to selectivity arises from slight constraints on the conformational freedom of the channel protein that limit the number of carbonyl oxygen atoms to a value better suited to K+ than Na+, despite the pore being flexible. This mechanism provides an example of a general framework for explaining ion discrimination in a range of natural and synthetic macromolecules in which selectivity is controlled by the number of coordinating ligands in addition to their dipole moment.

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Year:  2007        PMID: 17573427      PMCID: PMC1989715          DOI: 10.1529/biophysj.107.108167

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

1.  Ion permeation mechanism of the potassium channel.

Authors:  J Aqvist; V Luzhkov
Journal:  Nature       Date:  2000-04-20       Impact factor: 49.962

2.  Chemistry of ion coordination and hydration revealed by a K+ channel-Fab complex at 2.0 A resolution.

Authors:  Y Zhou; J H Morais-Cabral; A Kaufman; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

4.  K(+)/Na(+) selectivity of the KcsA potassium channel from microscopic free energy perturbation calculations.

Authors:  V B Luzhkov; J Aqvist
Journal:  Biochim Biophys Acta       Date:  2001-08-13

5.  K(+) versus Na(+) ions in a K channel selectivity filter: a simulation study.

Authors:  Indira H Shrivastava; D Peter Tieleman; Philip C Biggin; Mark S P Sansom
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

6.  Cation selective glass electrodes and their mode of operation.

Authors:  G EISENMAN
Journal:  Biophys J       Date:  1962-03       Impact factor: 4.033

7.  Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands.

Authors:  Sergei Yu Noskov; Simon Bernèche; Benoît Roux
Journal:  Nature       Date:  2004-10-14       Impact factor: 49.962

8.  KcsA: it's a potassium channel.

Authors:  M LeMasurier; L Heginbotham; C Miller
Journal:  J Gen Physiol       Date:  2001-09       Impact factor: 4.086

9.  Na+ block and permeation in a K+ channel of known structure.

Authors:  Crina M Nimigean; Christopher Miller
Journal:  J Gen Physiol       Date:  2002-09       Impact factor: 4.086

10.  Potassium channel, ions, and water: simulation studies based on the high resolution X-ray structure of KcsA.

Authors:  Carmen Domene; Mark S P Sansom
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

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  41 in total

1.  On the selective ion binding hypothesis for potassium channels.

Authors:  Ilsoo Kim; Toby W Allen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-19       Impact factor: 11.205

2.  Exploring the ion selectivity properties of a large number of simplified binding site models.

Authors:  Benoît Roux
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

3.  Multibody effects in ion binding and selectivity.

Authors:  Sameer Varma; Susan B Rempe
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4.  Mapping the importance of four factors in creating monovalent ion selectivity in biological molecules.

Authors:  Michael Thomas; Dylan Jayatilaka; Ben Corry
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

5.  Tuning the ion selectivity of tetrameric cation channels by changing the number of ion binding sites.

Authors:  Mehabaw G Derebe; David B Sauer; Weizhong Zeng; Amer Alam; Ning Shi; Youxing Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

Review 6.  Structural correlates of selectivity and inactivation in potassium channels.

Authors:  Jason G McCoy; Crina M Nimigean
Journal:  Biochim Biophys Acta       Date:  2011-09-16

7.  Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa.

Authors:  Niraj Modi; Sonalli Ganguly; Iván Bárcena-Uribarri; Roland Benz; Bert van den Berg; Ulrich Kleinekathöfer
Journal:  Biophys J       Date:  2015-10-06       Impact factor: 4.033

8.  K+/Na+ selectivity in toy cation binding site models is determined by the 'host'.

Authors:  David L Bostick; Karunesh Arora; Charles L Brooks
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

9.  Importance of the peptide backbone description in modeling the selectivity filter in potassium channels.

Authors:  Turgut Baştuğ; Serdar Kuyucak
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

10.  Structural transitions in ion coordination driven by changes in competition for ligand binding.

Authors:  Sameer Varma; Susan B Rempe
Journal:  J Am Chem Soc       Date:  2008-10-28       Impact factor: 15.419

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