Literature DB >> 16683786

Nanotube confinement denatures protein helices.

Eric J Sorin1, Vijay S Pande.   

Abstract

In striking contrast to simple polymer physics theory, which does not account for solvent effects, we find that physical confinement of solvated biopolymers decreases solvent entropy, which in turn leads to a reduction in the organized structural content of the polymer. Since our theory is based on a fundamental property of water-protein statistical mechanics, we expect it to have broad implications in many biological and material science contexts.

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Year:  2006        PMID: 16683786     DOI: 10.1021/ja060917j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  23 in total

1.  Charge, hydrophobicity, and confined water: putting past simulations into a simple theoretical framework.

Authors:  Jeremy L England; Vijay S Pande
Journal:  Biochem Cell Biol       Date:  2010-04       Impact factor: 3.626

2.  Adsorption mechanism and collapse propensities of the full-length, monomeric Aβ(1-42) on the surface of a single-walled carbon nanotube: a molecular dynamics simulation study.

Authors:  Asis K Jana; Neelanjana Sengupta
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

3.  A bulk water-dependent desolvation energy model for analyzing the effects of secondary solutes on biological equilibria.

Authors:  Daryl K Eggers
Journal:  Biochemistry       Date:  2011-02-21       Impact factor: 3.162

4.  Folding myoglobin within a sol-gel glass: protein folding constrained to a small volume.

Authors:  Eric S Peterson; Emma F Leonard; Jocelyn A Foulke; Matthew C Oliff; Rosanne D Salisbury; David Y Kim
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

Review 5.  Protein folding in confined and crowded environments.

Authors:  Huan-Xiang Zhou
Journal:  Arch Biochem Biophys       Date:  2007-08-01       Impact factor: 4.013

6.  An alpha-helical peptide in AOT micelles prefers to be localized at the water/headgroup interface.

Authors:  Jianhui Tian; Angel E Garcia
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

7.  Thermodynamics and kinetics of protein folding under confinement.

Authors:  Jeetain Mittal; Robert B Best
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-10       Impact factor: 11.205

8.  Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability.

Authors:  S Vaitheeswaran; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

9.  Theoretical study of the reduction in sensitivity of copper azide following encapsulation in carbon nanotubes.

Authors:  Guo-Ying Zhang; Ji-Min Han; Li Yang; Tong-Lai Zhang
Journal:  J Mol Model       Date:  2020-04-02       Impact factor: 1.810

10.  Factors governing helix formation in peptides confined to carbon nanotubes.

Authors:  Edward P O'Brien; George Stan; D Thirumalai; Bernard R Brooks
Journal:  Nano Lett       Date:  2008-09-26       Impact factor: 11.189

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