Literature DB >> 19423425

A robust Monte Carlo model for the extraction of biological absorption and scattering in vivo.

Janelle E Bender1, Karthik Vishwanath, Laura K Moore, J Quincy Brown, Vivide Chang, Gregory M Palmer, Nirmala Ramanujam.   

Abstract

We have a toolbox to quantify tissue optical properties that is composed of specialized fiberoptic probes for UV-visible diffuse reflectance spectroscopy and a fast, scalable inverse Monte Carlo (MC) model. In this paper, we assess the robustness of the toolbox for quantifying physiologically relevant parameters from turbid tissue-like media. In particular, we consider the effects of using different instruments, fiberoptic probes, and instrument-specific settings for a wide range of optical properties. Additionally, we test the quantitative accuracy of the inverse MC model for extracting the biologically relevant parameters of hemoglobin saturation and total hemoglobin concentration. We also test the effect of double-absorber phantoms (hemoglobin and crocin to model the absorption of hemoglobin and beta carotene, respectively, in the breast) for a range of absorption and scattering properties. We include an assessment on which reference phantom serves as the best calibration standard to enable accurate extraction of the absorption and scattering properties of the target sample. We found the best reference-target phantom combinations to be ones with similar scattering levels. The results from these phantom studies provide a set of guidelines for extracting optical parameters from clinical studies.

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Year:  2009        PMID: 19423425      PMCID: PMC2791541          DOI: 10.1109/TBME.2008.2005994

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  27 in total

1.  Reflectance-based determination of optical properties in highly attenuating tissue.

Authors:  T Joshua Pfefer; L Stephanie Matchette; Carrie L Bennett; Jessica A Gall; Joy N Wilke; Anthony J Durkin; Marwood N Ediger
Journal:  J Biomed Opt       Date:  2003-04       Impact factor: 3.170

2.  Autofluorescence and diffuse reflectance properties of malignant and benign breast tissues.

Authors:  Tara M Breslin; Fushen Xu; Gregory M Palmer; Changfang Zhu; Kennedy W Gilchrist; Nirmala Ramanujam
Journal:  Ann Surg Oncol       Date:  2004-01       Impact factor: 5.344

3.  Determination of complex refractive index of polystyrene microspheres from 370 to 1610 nm.

Authors:  Xiaoyan Ma; Jun Q Lu; R Scott Brock; Kenneth M Jacobs; Ping Yang; Xin-Hua Hu
Journal:  Phys Med Biol       Date:  2003-12-21       Impact factor: 3.609

4.  In vivo endoscopic tissue diagnostics based on spectroscopic absorption, scattering, and phase function properties.

Authors:  Philippe Thueler; Igor Charvet; Frederic Bevilacqua; M St Ghislain; G Ory; Pierre Marquet; Paolo Meda; Ben Vermeulen; Christian Depeursinge
Journal:  J Biomed Opt       Date:  2003-07       Impact factor: 3.170

5.  In vivo measurement of the local optical properties of tissue by use of differential path-length spectroscopy.

Authors:  Arjen Amelink; Henricus J C M Sterenborg; Martin P L Bard; Sjaak A Burgers
Journal:  Opt Lett       Date:  2004-05-15       Impact factor: 3.776

6.  Measurement of optical transport properties of normal and malignant human breast tissue.

Authors:  N Ghosh; S K Mohanty; S K Majumder; P K Gupta
Journal:  Appl Opt       Date:  2001-01-01       Impact factor: 1.980

7.  Light sheds light on cancer--distinguishing malignant tumors from benign tissues and tumors.

Authors:  R R Alfano; B B Das; J Cleary; R Prudente; E J Celmer
Journal:  Bull N Y Acad Med       Date:  1991 Mar-Apr

8.  Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy.

Authors:  Melissa C Skala; Gregory M Palmer; Kristin M Vrotsos; Annette Gendron-Fitzpatrick; Nirmala Ramanujam
Journal:  Opt Express       Date:  2007-06-11       Impact factor: 3.894

9.  Comparison of multiexcitation fluorescence and diffuse reflectance spectroscopy for the diagnosis of breast cancer (March 2003).

Authors:  Gregory M Palmer; Changfang Zhu; Tara M Breslin; Fushen Xu; Kennedy W Gilchrist; Nirmala Ramanujam
Journal:  IEEE Trans Biomed Eng       Date:  2003-11       Impact factor: 4.538

10.  Feasibility of near-infrared diffuse optical spectroscopy on patients undergoing imageguided core-needle biopsy.

Authors:  Bing Yu; Elizabeth S Burnside; Gale A Sisney; Josephine M Harter; Changfang Zhu; Al-Hafeez Dhalla; Nirmala Ramanujam
Journal:  Opt Express       Date:  2007-06-11       Impact factor: 3.894

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  28 in total

1.  Visible light optical spectroscopy is sensitive to neovascularization in the dysplastic cervix.

Authors:  Vivide Tuan-Chyan Chang; Sarah M Bean; Peter S Cartwright; Nirmala Ramanujam
Journal:  J Biomed Opt       Date:  2010 Sep-Oct       Impact factor: 3.170

2.  Portable, Fiber-Based, Diffuse Reflection Spectroscopy (DRS) Systems for Estimating Tissue Optical Properties.

Authors:  Karthik Vishwanath; Kevin Chang; Daniel Klein; Yu Feng Deng; Vivide Chang; Janelle E Phelps; Nimmi Ramanujam
Journal:  Appl Spectrosc       Date:  2011-02-01       Impact factor: 2.388

3.  Detection of squamous cell carcinoma and corresponding biomarkers using optical spectroscopy.

Authors:  H Wolfgang Beumer; Karthik Vishwanath; Liana Puscas; Hamid R Afshari; Nimmi Ramanujam; Walter T Lee
Journal:  Otolaryngol Head Neck Surg       Date:  2011-01-28       Impact factor: 3.497

4.  Quantitative physiology of the precancerous cervix in vivo through optical spectroscopy.

Authors:  Vivide Tuan-Chyan Chang; Peter S Cartwright; Sarah M Bean; Greg M Palmer; Rex C Bentley; Nirmala Ramanujam
Journal:  Neoplasia       Date:  2009-04       Impact factor: 5.715

5.  Experimental validation of an inverse fluorescence Monte Carlo model to extract concentrations of metabolically relevant fluorophores from turbid phantoms and a murine tumor model.

Authors:  Chengbo Liu; Narasimhan Rajaram; Karthik Vishwanath; Tony Jiang; Gregory M Palmer; Nirmala Ramanujam
Journal:  J Biomed Opt       Date:  2012-07       Impact factor: 3.170

6.  Novel diffuse optics system for continuous tissue viability monitoring - extended recovery in vivo testing in a porcine flap model.

Authors:  Seung Yup Lee; Julia M Pakela; Taylor L Hedrick; Karthik Vishwanath; Michael C Helton; Yooree Chung; Noah J Kolodziejski; Christopher J Stapels; Daniel R McAdams; Daniel E Fernandez; James F Christian; Jameson O'Reilly; Dana Farkas; Brent B Ward; Stephen E Feinberg; Mary-Ann Mycek
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2017-02-14

7.  Instrument independent diffuse reflectance spectroscopy.

Authors:  Bing Yu; Henry L Fu; Nirmala Ramanujam
Journal:  J Biomed Opt       Date:  2011 Jan-Feb       Impact factor: 3.170

8.  Broadband absorption and reduced scattering spectra of in-vivo skin can be noninvasively determined using δ-P1 approximation based spectral analysis.

Authors:  Cheng-Hung Hung; Ting-Chun Chou; Chao-Kai Hsu; Sheng-Hao Tseng
Journal:  Biomed Opt Express       Date:  2015-01-09       Impact factor: 3.732

9.  Miniature spectral imaging device for wide-field quantitative functional imaging of the morphological landscape of breast tumor margins.

Authors:  Brandon S Nichols; Antonio Llopis; Gregory M Palmer; Samuel S McCachren; Ozlem Senlik; David Miller; Martin A Brooke; Nan M Jokerst; Joseph Geradts; Rachel Greenup; Nimmi Ramanujam
Journal:  J Biomed Opt       Date:  2017-02-01       Impact factor: 3.170

10.  Quantitative optical spectroscopy: a robust tool for direct measurement of breast cancer vascular oxygenation and total hemoglobin content in vivo.

Authors:  J Quincy Brown; Lee G Wilke; Joseph Geradts; Stephanie A Kennedy; Gregory M Palmer; Nirmala Ramanujam
Journal:  Cancer Res       Date:  2009-03-17       Impact factor: 12.701

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