Literature DB >> 17912337

Comparison of a physical model and principal component analysis for the diagnosis of epithelial neoplasias in vivo using diffuse reflectance spectroscopy.

Melissa C Skala1, Gregory M Palmer, Kristin M Vrotsos, Annette Gendron-Fitzpatrick, Nirmala Ramanujam.   

Abstract

We explored the use of diffuse reflectance spectroscopy in the ultraviolet-visible (UV-VIS) spectrum for the diagnosis of epithelial precancers and cancers in vivo. A physical model (Monte Carlo inverse model) and an empirical model (principal component analysis, (PCA)) based approach were compared for extracting diagnostic features from diffuse reflectance spectra measured in vivo from the dimethylbenz[alpha]anthracene-treated hamster cheek pouch model of oral carcinogenesis. These diagnostic features were input into a support vector machine algorithm to classify each tissue sample as normal (n=10) or neoplastic (dysplasia to carcinoma, n=10) and cross-validated using a leave one out method. There was a statistically significant decrease in the absorption and reduced scattering coefficient at 460 nm in neoplastic compared to normal tissues, and these two features provided 90% classification accuracy. The first two principal components extracted from PCA provided a classification accuracy of 95%. The first principal component was highly correlated with the wavelength-averaged reduced scattering coefficient. Although both methods show similar classification accuracy, the physical model provides insight into the physiological and structural features that discriminate between normal and neoplastic tissues and does not require a priori, a representative set of spectral data from which to derive the principal components.

Entities:  

Year:  2007        PMID: 17912337      PMCID: PMC1999391          DOI: 10.1364/OE.15.007863

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  36 in total

1.  Quantitative near-infrared spectroscopy of cervical dysplasia in vivo.

Authors:  R Hornung; T H Pham; K A Keefe; M W Berns; Y Tadir; B J Tromberg
Journal:  Hum Reprod       Date:  1999-11       Impact factor: 6.918

2.  Reflectance-based determination of optical properties in highly attenuating tissue.

Authors:  T Joshua Pfefer; L Stephanie Matchette; Carrie L Bennett; Jessica A Gall; Joy N Wilke; Anthony J Durkin; Marwood N Ediger
Journal:  J Biomed Opt       Date:  2003-04       Impact factor: 3.170

3.  In vivo endoscopic tissue diagnostics based on spectroscopic absorption, scattering, and phase function properties.

Authors:  Philippe Thueler; Igor Charvet; Frederic Bevilacqua; M St Ghislain; G Ory; Pierre Marquet; Paolo Meda; Ben Vermeulen; Christian Depeursinge
Journal:  J Biomed Opt       Date:  2003-07       Impact factor: 3.170

4.  Mie and Rayleigh modeling of visible-light scattering in neonatal skin.

Authors:  I S Saidi; S L Jacques; F K Tittel
Journal:  Appl Opt       Date:  1995-11-01       Impact factor: 1.980

5.  Measurement of optical transport properties of normal and malignant human breast tissue.

Authors:  N Ghosh; S K Mohanty; S K Majumder; P K Gupta
Journal:  Appl Opt       Date:  2001-01-01       Impact factor: 1.980

6.  Mechanisms of light scattering from biological cells relevant to noninvasive optical-tissue diagnostics.

Authors:  J R Mourant; J P Freyer; A H Hielscher; A A Eick; D Shen; T M Johnson
Journal:  Appl Opt       Date:  1998-06-01       Impact factor: 1.980

7.  In vivo assessment and evaluation of lung tissue morphologic and physiological changes from non-contact endoscopic reflectance spectroscopy for improving lung cancer detection.

Authors:  Yasser S Fawzy; Mirjan Petek; Marjeta Tercelj; Haishan Zeng
Journal:  J Biomed Opt       Date:  2006 Jul-Aug       Impact factor: 3.170

8.  7,12-dimethylbenz[a]anthracene-induced 'early' squamous cell carcinoma in the Golden Syrian hamster: evaluation of an animal model and comparison with 'early' forms of human squamous cell carcinoma in the upper aero-digestive tract.

Authors:  S Andrejevic; J F Savary; C Fontolliet; P Monnier; H van Den Bergh
Journal:  Int J Exp Pathol       Date:  1996-02       Impact factor: 1.925

9.  In vivo multiphoton fluorescence lifetime imaging of protein-bound and free nicotinamide adenine dinucleotide in normal and precancerous epithelia.

Authors:  Melissa C Skala; Kristin M Riching; Damian K Bird; Annette Gendron-Fitzpatrick; Jens Eickhoff; Kevin W Eliceiri; Patricia J Keely; Nirmala Ramanujam
Journal:  J Biomed Opt       Date:  2007 Mar-Apr       Impact factor: 3.170

10.  Comparison of multiexcitation fluorescence and diffuse reflectance spectroscopy for the diagnosis of breast cancer (March 2003).

Authors:  Gregory M Palmer; Changfang Zhu; Tara M Breslin; Fushen Xu; Kennedy W Gilchrist; Nirmala Ramanujam
Journal:  IEEE Trans Biomed Eng       Date:  2003-11       Impact factor: 4.538

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  15 in total

1.  A robust Monte Carlo model for the extraction of biological absorption and scattering in vivo.

Authors:  Janelle E Bender; Karthik Vishwanath; Laura K Moore; J Quincy Brown; Vivide Chang; Gregory M Palmer; Nirmala Ramanujam
Journal:  IEEE Trans Biomed Eng       Date:  2009-04       Impact factor: 4.538

2.  Quantitative physiology of the precancerous cervix in vivo through optical spectroscopy.

Authors:  Vivide Tuan-Chyan Chang; Peter S Cartwright; Sarah M Bean; Greg M Palmer; Rex C Bentley; Nirmala Ramanujam
Journal:  Neoplasia       Date:  2009-04       Impact factor: 5.715

3.  Instrument independent diffuse reflectance spectroscopy.

Authors:  Bing Yu; Henry L Fu; Nirmala Ramanujam
Journal:  J Biomed Opt       Date:  2011 Jan-Feb       Impact factor: 3.170

Review 4.  Application of optical imaging and spectroscopy to radiation biology.

Authors:  Gregory M Palmer; Karthik Vishwanath; Mark W Dewhirst
Journal:  Radiat Res       Date:  2012-02-23       Impact factor: 2.841

5.  Diffuse reflectance spectroscopy of epithelial tissue with a smart fiber-optic probe.

Authors:  Bing Yu; Amy Shah; Vivek K Nagarajan; Daron G Ferris
Journal:  Biomed Opt Express       Date:  2014-02-10       Impact factor: 3.732

6.  Clinical study of noninvasive in vivo melanoma and nonmelanoma skin cancers using multimodal spectral diagnosis.

Authors:  Liang Lim; Brandon Nichols; Michael R Migden; Narasimhan Rajaram; Jason S Reichenberg; Mia K Markey; Merrick I Ross; James W Tunnell
Journal:  J Biomed Opt       Date:  2014       Impact factor: 3.170

7.  Spatially resolved diffuse reflectance spectroscopy endoscopic sensing with custom Si photodetectors.

Authors:  Ben Lariviere; Katherine S Garman; N Lynn Ferguson; Deborah A Fisher; Nan M Jokerst
Journal:  Biomed Opt Express       Date:  2018-02-15       Impact factor: 3.732

8.  Quantitative optical spectroscopy: a robust tool for direct measurement of breast cancer vascular oxygenation and total hemoglobin content in vivo.

Authors:  J Quincy Brown; Lee G Wilke; Joseph Geradts; Stephanie A Kennedy; Gregory M Palmer; Nirmala Ramanujam
Journal:  Cancer Res       Date:  2009-03-17       Impact factor: 12.701

9.  Non-invasive monitoring of intra-tumor drug concentration and therapeutic response using optical spectroscopy.

Authors:  Gregory M Palmer; Richard J Boruta; Benjamin L Viglianti; Lan Lan; Ivan Spasojevic; Mark W Dewhirst
Journal:  J Control Release       Date:  2009-11-05       Impact factor: 9.776

10.  Verification of a two-layer inverse Monte Carlo absorption model using multiple source-detector separation diffuse reflectance spectroscopy.

Authors:  Manu Sharma; Ricky Hennessy; Mia K Markey; James W Tunnell
Journal:  Biomed Opt Express       Date:  2013-12-02       Impact factor: 3.732

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