Literature DB >> 19411170

The basal initiation machinery: beyond the general transcription factors.

Timothy W Sikorski1, Stephen Buratowski.   

Abstract

In vitro experiments led to a simple model in which basal transcription factors sequentially assembled with RNA Polymerase II to generate a preinitiation complex (PIC). Emerging evidence indicates that PIC composition is not universal, but promoter-dependent. Active promoters are occupied by a mixed population of complexes, including regulatory factors such as NC2, Mot1, Mediator, and TFIIS. Recent studies are expanding our understanding of the roles of these factors, demonstrating that their functions are both broader and more context dependent than previously realized.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19411170      PMCID: PMC2692371          DOI: 10.1016/j.ceb.2009.03.006

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  87 in total

1.  Independent recruitment in vivo by Gal4 of two complexes required for transcription.

Authors:  Gene O Bryant; Mark Ptashne
Journal:  Mol Cell       Date:  2003-05       Impact factor: 17.970

2.  Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage.

Authors:  Hubert Kettenberger; Karim-Jean Armache; Patrick Cramer
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

3.  Cellular stress alters the transcriptional properties of promoter-bound Mot1-TBP complexes.

Authors:  Joseph V Geisberg; Kevin Struhl
Journal:  Mol Cell       Date:  2004-05-21       Impact factor: 17.970

4.  A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae.

Authors:  Kathryn L Huisinga; B Franklin Pugh
Journal:  Mol Cell       Date:  2004-02-27       Impact factor: 17.970

5.  Genetic interactions of DST1 in Saccharomyces cerevisiae suggest a role of TFIIS in the initiation-elongation transition.

Authors:  Francisco Malagon; Amy H Tong; Brenda K Shafer; Jeffrey N Strathern
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

Review 6.  Roles for BTAF1 and Mot1p in dynamics of TATA-binding protein and regulation of RNA polymerase II transcription.

Authors:  Lloyd A Pereira; Marcin P Klejman; H Th Marc Timmers
Journal:  Gene       Date:  2003-10-02       Impact factor: 3.688

7.  Human mediator enhances activator-facilitated recruitment of RNA polymerase II and promoter recognition by TATA-binding protein (TBP) independently of TBP-associated factors.

Authors:  Shwu-Yuan Wu; Tianyuan Zhou; Cheng-Ming Chiang
Journal:  Mol Cell Biol       Date:  2003-09       Impact factor: 4.272

8.  Identification and distinct regulation of yeast TATA box-containing genes.

Authors:  Andrew D Basehoar; Sara J Zanton; B Franklin Pugh
Journal:  Cell       Date:  2004-03-05       Impact factor: 41.582

9.  Spt3 and Mot1 cooperate in nucleosome remodeling independently of TBP recruitment.

Authors:  Irini Topalidou; Manolis Papamichos-Chronakis; George Thireos; Dimitris Tzamarias
Journal:  EMBO J       Date:  2004-04-01       Impact factor: 11.598

10.  Identification of TFB5, a new component of general transcription and DNA repair factor IIH.

Authors:  Jeffrey A Ranish; Steven Hahn; Yu Lu; Eugene C Yi; Xiao-jun Li; Jimmy Eng; Ruedi Aebersold
Journal:  Nat Genet       Date:  2004-06-27       Impact factor: 38.330

View more
  86 in total

1.  Cdc73 subunit of Paf1 complex contains C-terminal Ras-like domain that promotes association of Paf1 complex with chromatin.

Authors:  Christopher G Amrich; Christopher P Davis; Walter P Rogal; Margaret K Shirra; Annie Heroux; Richard G Gardner; Karen M Arndt; Andrew P VanDemark
Journal:  J Biol Chem       Date:  2012-02-08       Impact factor: 5.157

Review 2.  Transcription goes digital.

Authors:  Timothée Lionnet; Robert H Singer
Journal:  EMBO Rep       Date:  2012-04-02       Impact factor: 8.807

3.  Transcription control by long non-coding RNAs.

Authors:  Tyler Faust; Alan Frankel; Iván D'Orso
Journal:  Transcription       Date:  2012-03-01

4.  A TFIIH-associated mediator head is a basal factor of small nuclear spliced leader RNA gene transcription in early-diverged trypanosomes.

Authors:  Ju Huck Lee; Gang Cai; Aswini K Panigrahi; Star Dunham-Ems; Tu N Nguyen; Justin D Radolf; Francisco J Asturias; Arthur Günzl
Journal:  Mol Cell Biol       Date:  2010-09-27       Impact factor: 4.272

Review 5.  RNA polymerase II transcription elongation control.

Authors:  Jiannan Guo; David H Price
Journal:  Chem Rev       Date:  2013-08-06       Impact factor: 60.622

Review 6.  Mechanisms for ATP-dependent chromatin remodelling: the means to the end.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  FEBS J       Date:  2011-09-08       Impact factor: 5.542

7.  Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

Authors:  Frederic Koch; Romain Fenouil; Marta Gut; Pierre Cauchy; Thomas K Albert; Joaquin Zacarias-Cabeza; Salvatore Spicuglia; Albane Lamy de la Chapelle; Martin Heidemann; Corinna Hintermair; Dirk Eick; Ivo Gut; Pierre Ferrier; Jean-Christophe Andrau
Journal:  Nat Struct Mol Biol       Date:  2011-07-17       Impact factor: 15.369

8.  Mot1, Ino80C, and NC2 Function Coordinately to Regulate Pervasive Transcription in Yeast and Mammals.

Authors:  Yong Xue; Suman K Pradhan; Fei Sun; Constantinos Chronis; Nancy Tran; Trent Su; Christopher Van; Ajay Vashisht; James Wohlschlegel; Craig L Peterson; H T Marc Timmers; Siavash K Kurdistani; Michael F Carey
Journal:  Mol Cell       Date:  2017-07-20       Impact factor: 17.970

Review 9.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

10.  An Oct4-centered protein interaction network in embryonic stem cells.

Authors:  Debbie L C van den Berg; Tim Snoek; Nick P Mullin; Adam Yates; Karel Bezstarosti; Jeroen Demmers; Ian Chambers; Raymond A Poot
Journal:  Cell Stem Cell       Date:  2010-04-02       Impact factor: 24.633

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.