Literature DB >> 17028020

In meso structure of the cobalamin transporter, BtuB, at 1.95 A resolution.

V Cherezov1, E Yamashita, W Liu, M Zhalnina, W A Cramer, M Caffrey.   

Abstract

Crystals of the apo form of the vitamin B12 and colicin receptor, BtuB, that diffract to 1.95 A have been grown by the membrane-based in meso technique. The structure of the protein differs in several details from that of its counterpart grown by the more traditional, detergent-based (in surfo) method. Some of these differences include (i) the five N-terminal residues are resolved in meso, (ii) residues 57-62 in the hatch domain and residues 574-581 in loop 21-22 are disordered in meso and are ordered in surfo, (iii) residues 278-287 in loop 7-8 are resolved in meso, (iv) residues 324-331 in loop 9-10, 396-411 in loop 13-14, 442-458 in loop 15-16 and 526-541 in loop 19-20 have large differences in position between the two crystal forms, as have residues 86-96 in the hatch domain, and (v) the conformation of residues 6 and 7 in the Ton box (considered critical to signal transduction and substrate transport) are entirely different in the two structures. Importantly, the in meso orientation of residues 6 and 7 is similar to that of the vitamin B12-charged state. These data suggest that the "substrate-induced" 180 degrees -rotation of residues 6 and 7 reported in the literature may not be a unique signalling event. The extent to which these findings agree with structural, dynamic and functional insights gleaned from site-directed spin labelling and electron paramagnetic resonance measurements is evaluated. Packing in in meso grown crystals is dense and layered, consistent with the current model for crystallogenesis of membrane proteins in lipidic mesophases. Layered packing has been used to locate the transmembrane hydrophobic surface of the protein. Generally, this is consistent with tryptophan, tyrosine, lipid and CalphaB-factor distributions in the protein, and with predictions based on transfer free energy calculations.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17028020      PMCID: PMC1808586          DOI: 10.1016/j.jmb.2006.09.022

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  34 in total

Review 1.  Membrane protein folding and stability: physical principles.

Authors:  S H White; W C Wimley
Journal:  Annu Rev Biophys Biomol Struct       Date:  1999

2.  Structure of the light-driven chloride pump halorhodopsin at 1.8 A resolution.

Authors:  M Kolbe; H Besir; L O Essen; D Oesterhelt
Journal:  Science       Date:  2000-05-26       Impact factor: 47.728

Review 3.  Membrane protein crystallization.

Authors:  Martin Caffrey
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

Review 4.  The Tol proteins of Escherichia coli and their involvement in the translocation of group A colicins.

Authors:  Jean-Claude Lazzaroni; Jean-François Dubuisson; Anne Vianney
Journal:  Biochimie       Date:  2002 May-Jun       Impact factor: 4.079

5.  Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer.

Authors:  Peter J Bond; Mark S P Sansom
Journal:  J Mol Biol       Date:  2003-06-20       Impact factor: 5.469

6.  Rational design of lipid molecular structure: a case study involving the C19:1c10 monoacylglycerol.

Authors:  Y Misquitta; M Caffrey
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

7.  Biophysical and transfection studies of the diC(14)-amidine/DNA complex.

Authors:  Vadim Cherezov; Hong Qiu; Veronique Pector; Michel Vandenbranden; Jean-Marie Ruysschaert; Martin Caffrey
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

8.  Crystallization and initial X-ray diffraction of BtuB, the integral membrane cobalamin transporter of Escherichia coli.

Authors:  David P Chimento; Arun K Mohanty; Robert J Kadner; Michael C Wiener
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-02-21

9.  Substrate-induced conformational changes of the periplasmic N-terminus of an outer-membrane transporter by site-directed spin labeling.

Authors:  Gail E Fanucci; Kelly A Coggshall; Nathalie Cadieux; Miyeon Kim; Robert J Kadner; David S Cafiso
Journal:  Biochemistry       Date:  2003-02-18       Impact factor: 3.162

10.  Substrate-induced transmembrane signaling in the cobalamin transporter BtuB.

Authors:  David P Chimento; Arun K Mohanty; Robert J Kadner; Michael C Wiener
Journal:  Nat Struct Biol       Date:  2003-05
View more
  44 in total

1.  Membrane proteins in four acts: function precedes structure determination.

Authors:  W A Cramer; S D Zakharov; S Saif Hasan; H Zhang; D Baniulis; M V Zhalnina; G M Soriano; O Sharma; J C Rochet; C Ryan; J Whitelegge; G Kurisu; E Yamashita
Journal:  Methods       Date:  2011-11-10       Impact factor: 3.608

2.  Celebrating structural biology.

Authors: 
Journal:  Nat Struct Mol Biol       Date:  2011-12-05       Impact factor: 15.369

3.  The N-terminal domain of a TonB-dependent transporter undergoes a reversible stepwise denaturation.

Authors:  Ricardo H Flores Jiménez; David S Cafiso
Journal:  Biochemistry       Date:  2012-04-22       Impact factor: 3.162

4.  Mobility of BtuB and OmpF in the Escherichia coli outer membrane: implications for dynamic formation of a translocon complex.

Authors:  Jeff Spector; Stanislav Zakharov; Yoriko Lill; Onkar Sharma; William A Cramer; Ken Ritchie
Journal:  Biophys J       Date:  2010-12-15       Impact factor: 4.033

5.  Redesign of a plugged beta-barrel membrane protein.

Authors:  Mohammad M Mohammad; Khalil R Howard; Liviu Movileanu
Journal:  J Biol Chem       Date:  2010-12-28       Impact factor: 5.157

Review 6.  Influence of solubilizing environments on membrane protein structures.

Authors:  Timothy A Cross; Mukesh Sharma; Myunggi Yi; Huan-Xiang Zhou
Journal:  Trends Biochem Sci       Date:  2010-08-18       Impact factor: 13.807

7.  Molecular basis for substrate-dependent transmembrane signaling in an outer-membrane transporter.

Authors:  Stephen M Lukasik; K W David Ho; David S Cafiso
Journal:  J Mol Biol       Date:  2007-05-18       Impact factor: 5.469

8.  Structure refinement of the OpcA adhesin using molecular dynamics.

Authors:  Binquan Luan; Martin Caffrey; Aleksei Aksimentiev
Journal:  Biophys J       Date:  2007-11-01       Impact factor: 4.033

Review 9.  Conversion of cobinamide into adenosylcobamide in bacteria and archaea.

Authors:  Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2007-05-04       Impact factor: 3.490

10.  Osmolytes modulate conformational exchange in solvent-exposed regions of membrane proteins.

Authors:  Ricardo H Flores Jiménez; Marie-Ange Do Cao; Miyeon Kim; David S Cafiso
Journal:  Protein Sci       Date:  2010-02       Impact factor: 6.725

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.