Literature DB >> 17641629

Crystallization of soluble proteins in vapor diffusion for x-ray crystallography.

Manuela Benvenuti1, Stefano Mangani.   

Abstract

The preparation of protein single crystals represents one of the major obstacles in obtaining the detailed 3D structure of a biological macromolecule. The complete automation of the crystallization procedures requires large investments in terms of money and labor, which are available only to large dedicated infrastructures and is mostly suited for genomic-scale projects. On the other hand, many research projects from departmental laboratories are devoted to the study of few specific proteins. Here, we try to provide a series of protocols for the crystallization of soluble proteins, especially the difficult ones, tailored for small-scale research groups. An estimate of the time needed to complete each of the steps described can be found at the end of each section.

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Year:  2007        PMID: 17641629     DOI: 10.1038/nprot.2007.198

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  51 in total

1.  Crystallization of a challenging antigen-antibody complex: TLR3 ECD with three noncompeting Fabs.

Authors:  Thomas J Malia; Galina Obmolova; Jinquan Luo; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-09-30

2.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

Review 3.  Rastering strategy for screening and centring of microcrystal samples of human membrane proteins with a sub-10 microm size X-ray synchrotron beam.

Authors:  Vadim Cherezov; Michael A Hanson; Mark T Griffith; Mark C Hilgart; Ruslan Sanishvili; Venugopalan Nagarajan; Sergey Stepanov; Robert F Fischetti; Peter Kuhn; Raymond C Stevens
Journal:  J R Soc Interface       Date:  2009-06-17       Impact factor: 4.118

4.  Large-volume protein crystal growth for neutron macromolecular crystallography.

Authors:  Joseph D Ng; James K Baird; Leighton Coates; Juan M Garcia-Ruiz; Teresa A Hodge; Sijay Huang
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-03-30       Impact factor: 1.056

5.  Structural insight into potent broad-spectrum inhibition with reversible recyclization mechanism: avibactam in complex with CTX-M-15 and Pseudomonas aeruginosa AmpC β-lactamases.

Authors:  Sushmita D Lahiri; Stefano Mangani; Thomas Durand-Reville; Manuela Benvenuti; Filomena De Luca; Gautam Sanyal; Jean-Denis Docquier
Journal:  Antimicrob Agents Chemother       Date:  2013-02-25       Impact factor: 5.191

6.  Porous nucleating agents for protein crystallization.

Authors:  Sahir Khurshid; Emmanuel Saridakis; Lata Govada; Naomi E Chayen
Journal:  Nat Protoc       Date:  2014-06-12       Impact factor: 13.491

7.  The structure of the human glutaminyl cyclase-SEN177 complex indicates routes for developing new potent inhibitors as possible agents for the treatment of neurological disorders.

Authors:  Cecilia Pozzi; Flavio Di Pisa; Manuela Benvenuti; Stefano Mangani
Journal:  J Biol Inorg Chem       Date:  2018-08-21       Impact factor: 3.358

8.  Iterative Molecular Dynamics-Rosetta Membrane Protein Structure Refinement Guided by Cryo-EM Densities.

Authors:  Sumudu P Leelananda; Steffen Lindert
Journal:  J Chem Theory Comput       Date:  2017-09-26       Impact factor: 6.006

9.  High-throughput in situ X-ray screening of and data collection from protein crystals at room temperature and under cryogenic conditions.

Authors:  Jana Broecker; Takefumi Morizumi; Wei-Lin Ou; Viviane Klingel; Anling Kuo; David J Kissick; Andrii Ishchenko; Ming-Yue Lee; Shenglan Xu; Oleg Makarov; Vadim Cherezov; Craig M Ogata; Oliver P Ernst
Journal:  Nat Protoc       Date:  2018-01-04       Impact factor: 13.491

10.  Crystal Structure of the Pseudomonas aeruginosa BEL-1 Extended-Spectrum β-Lactamase and Its Complexes with Moxalactam and Imipenem.

Authors:  Cecilia Pozzi; Filomena De Luca; Manuela Benvenuti; Laurent Poirel; Patrice Nordmann; Gian Maria Rossolini; Stefano Mangani; Jean-Denis Docquier
Journal:  Antimicrob Agents Chemother       Date:  2016-11-21       Impact factor: 5.191

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