Literature DB >> 19369953

Using movies to analyse gene circuit dynamics in single cells.

James C W Locke1, Michael B Elowitz.   

Abstract

Many bacterial systems rely on dynamic genetic circuits to control crucial biological processes. A major goal of systems biology is to understand these behaviours in terms of individual genes and their interactions. However, traditional techniques based on population averages 'wash out' crucial dynamics that are either unsynchronized between cells or are driven by fluctuations, or 'noise', in cellular components. Recently, the combination of time-lapse microscopy, quantitative image analysis and fluorescent protein reporters has enabled direct observation of multiple cellular components over time in individual cells. In conjunction with mathematical modelling, these techniques are now providing powerful insights into genetic circuit behaviour in diverse microbial systems.

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Year:  2009        PMID: 19369953      PMCID: PMC2853934          DOI: 10.1038/nrmicro2056

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  74 in total

1.  Rapid pole-to-pole oscillation of a protein required for directing division to the middle of Escherichia coli.

Authors:  D M Raskin; P A de Boer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

2.  Analysis of single-cell differences by use of an on-chip microculture system and optical trapping.

Authors:  Y Wakamoto; I Inoue; H Moriguchi; K Yasuda
Journal:  Fresenius J Anal Chem       Date:  2001-09

3.  Mitosis in living budding yeast: anaphase A but no metaphase plate.

Authors:  A F Straight; W F Marshall; J W Sedat; A W Murray
Journal:  Science       Date:  1997-07-25       Impact factor: 47.728

4.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

5.  Modeling a synthetic multicellular clock: repressilators coupled by quorum sensing.

Authors:  Jordi Garcia-Ojalvo; Michael B Elowitz; Steven H Strogatz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-15       Impact factor: 11.205

6.  Cyanobacterial clock, a stable phase oscillator with negligible intercellular coupling.

Authors:  M Amdaoud; M Vallade; C Weiss-Schaber; I Mihalcescu
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-16       Impact factor: 11.205

7.  Noise in gene expression determines cell fate in Bacillus subtilis.

Authors:  Hédia Maamar; Arjun Raj; David Dubnau
Journal:  Science       Date:  2007-06-14       Impact factor: 47.728

8.  Coherence and timing of cell cycle start examined at single-cell resolution.

Authors:  James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Mol Cell       Date:  2006-01-06       Impact factor: 17.970

9.  Single-cell quantification of molecules and rates using open-source microscope-based cytometry.

Authors:  Andrew Gordon; Alejandro Colman-Lerner; Tina E Chin; Kirsten R Benjamin; Richard C Yu; Roger Brent
Journal:  Nat Methods       Date:  2007-01-21       Impact factor: 28.547

10.  Automated tracking of gene expression in individual cells and cell compartments.

Authors:  Hailin Shen; Glyn Nelson; David E Nelson; Stephnie Kennedy; David G Spiller; Tony Griffiths; Norman Paton; Stephen G Oliver; Michael R H White; Douglas B Kell
Journal:  J R Soc Interface       Date:  2006-12-22       Impact factor: 4.118

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  102 in total

Review 1.  Heterogeneous bacterial persisters and engineering approaches to eliminate them.

Authors:  Kyle R Allison; Mark P Brynildsen; James J Collins
Journal:  Curr Opin Microbiol       Date:  2011-09-19       Impact factor: 7.934

Review 2.  Transcription goes digital.

Authors:  Timothée Lionnet; Robert H Singer
Journal:  EMBO Rep       Date:  2012-04-02       Impact factor: 8.807

Review 3.  The role of physiological heterogeneity in microbial population behavior.

Authors:  Mary E Lidstrom; Michael C Konopka
Journal:  Nat Chem Biol       Date:  2010-09-17       Impact factor: 15.040

Review 4.  Measurement of single-cell dynamics.

Authors:  David G Spiller; Christopher D Wood; David A Rand; Michael R H White
Journal:  Nature       Date:  2010-06-10       Impact factor: 49.962

Review 5.  Genetic design automation: engineering fantasy or scientific renewal?

Authors:  Matthew W Lux; Brian W Bramlett; David A Ball; Jean Peccoud
Journal:  Trends Biotechnol       Date:  2011-10-14       Impact factor: 19.536

6.  Cell-cell contacts confine public goods diffusion inside Pseudomonas aeruginosa clonal microcolonies.

Authors:  Thomas Julou; Thierry Mora; Laurent Guillon; Vincent Croquette; Isabelle J Schalk; David Bensimon; Nicolas Desprat
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-15       Impact factor: 11.205

7.  Decision making at a subcellular level determines the outcome of bacteriophage infection.

Authors:  Lanying Zeng; Samuel O Skinner; Chenghang Zong; Jean Sippy; Michael Feiss; Ido Golding
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

8.  Central role of the cell in microbial ecology.

Authors:  Karsten Zengler
Journal:  Microbiol Mol Biol Rev       Date:  2009-12       Impact factor: 11.056

9.  A synthetic three-color scaffold for monitoring genetic regulation and noise.

Authors:  Robert Sidney Cox; Mary J Dunlop; Michael B Elowitz
Journal:  J Biol Eng       Date:  2010-07-21       Impact factor: 4.355

10.  Generation of double-labeled reporter cell lines for studying co-dynamics of endogenous proteins in individual human cells.

Authors:  Irina Issaeva; Ariel A Cohen; Eran Eden; Cellina Cohen-Saidon; Tamar Danon; Lydia Cohen; Uri Alon
Journal:  PLoS One       Date:  2010-10-21       Impact factor: 3.240

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