Literature DB >> 17438272

Cyanobacterial clock, a stable phase oscillator with negligible intercellular coupling.

M Amdaoud1, M Vallade, C Weiss-Schaber, I Mihalcescu.   

Abstract

Accuracy in cellular function has to be achieved despite random fluctuations (noise) in the concentrations of different molecular constituents inside and outside the cell. The circadian oscillator in cyanobacteria is an example of resilience to noise. This resilience could be either the consequence of intercellular communication or the intrinsic property of the built-in biochemical network. Here we investigate the intercellular coupling hypothesis. A short theoretical depiction of interacting noisy phase oscillators, confirmed by numerical simulations, allows us to discriminate the effect of coupling from noise. Experimentally, by studying the phase of concurrent populations of different initial phases, we evaluate a very small upper limit of the intercellular coupling strength. In addition, in situ entrainment experiments confirm our ability to detect a coupling of the circadian oscillator to an external force and to describe explicitly the dynamic change of the mean phase. We demonstrate, therefore, that the cyanobacterial clock stability is a built-in property as the intercellular coupling effect is negligible.

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Year:  2007        PMID: 17438272      PMCID: PMC1855407          DOI: 10.1073/pnas.0609315104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  cpmA, a gene involved in an output pathway of the cyanobacterial circadian system.

Authors:  M Katayama; N F Tsinoremas; T Kondo; S S Golden
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

2.  An in vivo dual-reporter system of cyanobacteria using two railroad-worm luciferases with different color emissions.

Authors:  Yohko Kitayama; Takao Kondo; Yoichi Nakahira; Hideya Nishimura; Yoshihiro Ohmiya; Tokitaka Oyama
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3.  Circadian gene expression in individual fibroblasts: cell-autonomous and self-sustained oscillators pass time to daughter cells.

Authors:  Emi Nagoshi; Camille Saini; Christoph Bauer; Thierry Laroche; Felix Naef; Ueli Schibler
Journal:  Cell       Date:  2004-11-24       Impact factor: 41.582

4.  Hourglass model for a protein-based circadian oscillator.

Authors:  Eldon Emberly; Ned S Wingreen
Journal:  Phys Rev Lett       Date:  2006-01-24       Impact factor: 9.161

5.  Cellular construction of a circadian clock: period determination in the suprachiasmatic nuclei.

Authors:  C Liu; D R Weaver; S H Strogatz; S M Reppert
Journal:  Cell       Date:  1997-12-12       Impact factor: 41.582

6.  Expression of the psbDII gene in Synechococcus sp. strain PCC 7942 requires sequences downstream of the transcription start site.

Authors:  S A Bustos; S S Golden
Journal:  J Bacteriol       Date:  1991-12       Impact factor: 3.490

7.  Precision of the Gonyaulax circadian clock.

Authors:  D Njus; V D Gooch; J W Hastings
Journal:  Cell Biophys       Date:  1981-09

8.  Temporal precision in the mammalian circadian system: a reliable clock from less reliable neurons.

Authors:  Erik D Herzog; Sara J Aton; Rika Numano; Yoshiyuki Sakaki; Hajime Tei
Journal:  J Biol Rhythms       Date:  2004-02       Impact factor: 3.182

9.  Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression.

Authors:  David K Welsh; Seung-Hee Yoo; Andrew C Liu; Joseph S Takahashi; Steve A Kay
Journal:  Curr Biol       Date:  2004-12-29       Impact factor: 10.834

10.  Circadian rhythmicity by autocatalysis.

Authors:  Arun Mehra; Christian I Hong; Mi Shi; Jennifer J Loros; Jay C Dunlap; Peter Ruoff
Journal:  PLoS Comput Biol       Date:  2006-06-08       Impact factor: 4.475

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  19 in total

1.  Robust circadian clocks from coupled protein-modification and transcription-translation cycles.

Authors:  David Zwicker; David K Lubensky; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

Review 2.  Circadian Rhythms in Cyanobacteria.

Authors:  Susan E Cohen; Susan S Golden
Journal:  Microbiol Mol Biol Rev       Date:  2015-12       Impact factor: 11.056

3.  Mechanism of robust circadian oscillation of KaiC phosphorylation in vitro.

Authors:  Kohei Eguchi; Mitsumasa Yoda; Tomoki P Terada; Masaki Sasai
Journal:  Biophys J       Date:  2008-05-23       Impact factor: 4.033

Review 4.  The molecular clockwork of a protein-based circadian oscillator.

Authors:  Joseph S Markson; Erin K O'Shea
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

Review 5.  Metabolic compensation and circadian resilience in prokaryotic cyanobacteria.

Authors:  Carl Hirschie Johnson; Martin Egli
Journal:  Annu Rev Biochem       Date:  2014       Impact factor: 23.643

6.  Costs of Clock-Environment Misalignment in Individual Cyanobacterial Cells.

Authors:  Guillaume Lambert; Justin Chew; Michael J Rust
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

Review 7.  The itty-bitty time machine genetics of the cyanobacterial circadian clock.

Authors:  Shannon R Mackey; Susan S Golden; Jayna L Ditty
Journal:  Adv Genet       Date:  2011       Impact factor: 1.944

Review 8.  A cyanobacterial circadian clockwork.

Authors:  Carl Hirschie Johnson; Tetsuya Mori; Yao Xu
Journal:  Curr Biol       Date:  2008-09-09       Impact factor: 10.834

9.  Genome-wide and heterocyst-specific circadian gene expression in the filamentous Cyanobacterium Anabaena sp. strain PCC 7120.

Authors:  Hiroko Kushige; Hideyuki Kugenuma; Masaki Matsuoka; Shigeki Ehira; Masayuki Ohmori; Hideo Iwasaki
Journal:  J Bacteriol       Date:  2013-01-11       Impact factor: 3.490

10.  Circadian KaiC phosphorylation: a multi-layer network.

Authors:  Congxin Li; Xiaofang Chen; Pengye Wang; Weichi Wang
Journal:  PLoS Comput Biol       Date:  2009-11-20       Impact factor: 4.475

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