Literature DB >> 19362012

Utilizing artificial neural networks in MATLAB to achieve parts-per-billion mass measurement accuracy with a fourier transform ion cyclotron resonance mass spectrometer.

D Keith Williams1, Alexander L Kovach, David C Muddiman, Kenneth W Hanck.   

Abstract

Fourier transform ion cyclotron resonance mass spectrometry has the ability to realize exceptional mass measurement accuracy (MMA); MMA is one of the most significant attributes of mass spectrometric measurements as it affords extraordinary molecular specificity. However, due to space-charge effects, the achievable MMA significantly depends on the total number of ions trapped in the ICR cell for a particular measurement, as well as relative ion abundance of a given species. Artificial neural network calibration in conjunction with automatic gain control (AGC) is utilized in these experiments to formally account for the differences in total ion population in the ICR cell between the external calibration spectra and experimental spectra. In addition, artificial neural network calibration is used to account for both differences in total ion population in the ICR cell as well as relative ion abundance of a given species, which also affords mean MMA values at the parts-per-billion level.

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Year:  2009        PMID: 19362012      PMCID: PMC2752871          DOI: 10.1016/j.jasms.2009.02.030

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  23 in total

1.  High-mass accuracy of product ions produced by SORI-CID using a dual electrospray ionization source coupled with FTICR mass spectrometry.

Authors:  J W Flora; J C Hannis; D C Muddiman
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2.  Baseline mass resolution of peptide isobars: a record for molecular mass resolution.

Authors:  F He; C L Hendrickson; A G Marshall
Journal:  Anal Chem       Date:  2001-02-01       Impact factor: 6.986

3.  Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications.

Authors:  John E P Syka; Jarrod A Marto; Dina L Bai; Stevan Horning; Michael W Senko; Jae C Schwartz; Beatrix Ueberheide; Benjamin Garcia; Scott Busby; Tara Muratore; Jeffrey Shabanowitz; Donald F Hunt
Journal:  J Proteome Res       Date:  2004 May-Jun       Impact factor: 4.466

4.  Improved mass accuracy for tandem mass spectrometry.

Authors:  Nathan K Kaiser; Gordon A Anderson; James E Bruce
Journal:  J Am Soc Mass Spectrom       Date:  2005-04       Impact factor: 3.109

5.  Sub part-per-million mass accuracy by using stepwise-external calibration in fourier transform ion cyclotron resonance mass spectrometry.

Authors:  Richard L Wong; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2006-08-24       Impact factor: 3.109

6.  Parts-per-billion mass measurement accuracy achieved through the combination of multiple linear regression and automatic gain control in a Fourier transform ion cyclotron resonance mass spectrometer.

Authors:  D Keith Williams; David C Muddiman
Journal:  Anal Chem       Date:  2007-06-01       Impact factor: 6.986

7.  Application of neural networks to automated assignment of NMR spectra of proteins.

Authors:  B J Hare; J H Prestegard
Journal:  J Biomol NMR       Date:  1994-01       Impact factor: 2.835

8.  Statistical evaluation of internal and external mass calibration laws utilized in fourier transform ion cyclotron resonance mass spectrometry.

Authors:  David C Muddiman; Ann L Oberg
Journal:  Anal Chem       Date:  2005-04-15       Impact factor: 6.986

9.  Automatic gain control in mass spectrometry using a jet disrupter electrode in an electrodynamic ion funnel.

Authors:  Jason S Page; Bogdan Bogdanov; Andrey N Vilkov; David C Prior; Michael A Buschbach; Keqi Tang; Richard D Smith
Journal:  J Am Soc Mass Spectrom       Date:  2005-02       Impact factor: 3.109

10.  Characterization of mouse spleen cells by subtractive proteomics.

Authors:  Francisco J Dieguez-Acuna; Scott A Gerber; Shohta Kodama; Joshua E Elias; Sean A Beausoleil; Denise Faustman; Steven P Gygi
Journal:  Mol Cell Proteomics       Date:  2005-07-21       Impact factor: 5.911

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  5 in total

1.  Comment on: "Utilizing artificial neural networks in MATLAB to achieve parts-per-billion mass measurement accuracy with a Fourier transform ion cyclotron resonance mass spectrometer" by D. Keith Williams Jr., Alexander L. Kovach, David C. Muddiman, and Kenneth W. Hanck. J. Am. Soc. Mass Spectrom. 20, 1303-1310 (2009).

Authors:  Charles Proctor
Journal:  J Am Soc Mass Spectrom       Date:  2014-04       Impact factor: 3.109

2.  Mass recalibration of FT-ICR mass spectrometry imaging data using the average frequency shift of ambient ions.

Authors:  Jeremy A Barry; Guillaume Robichaud; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2013-05-29       Impact factor: 3.109

3.  Advances in structure elucidation of small molecules using mass spectrometry.

Authors:  Tobias Kind; Oliver Fiehn
Journal:  Bioanal Rev       Date:  2010-08-21

4.  A new strategy for early diagnosis of type 2 diabetes by standard-free, label-free LC-MS/MS quantification of glycated peptides.

Authors:  Mei Zhang; Wei Xu; Yulin Deng
Journal:  Diabetes       Date:  2013-07-26       Impact factor: 9.461

Review 5.  Developments in FTICR-MS and Its Potential for Body Fluid Signatures.

Authors:  Simone Nicolardi; Bogdan Bogdanov; André M Deelder; Magnus Palmblad; Yuri E M van der Burgt
Journal:  Int J Mol Sci       Date:  2015-11-13       Impact factor: 5.923

  5 in total

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