Literature DB >> 19305164

Non-coding RNAs, epigenetic memory and the passage of information to progeny.

Kevin V Morris1.   

Abstract

Over the last few years it has become increasingly apparent that RNA is involved in various forms of gene regulation. While much emphasis has been placed on the role of small non-coding RNAs in post-transcriptional modes of gene regulation it has become apparent that a far more complex scenario exists. Recent observations insinuate a paradigm whereby non-coding RNAs are operative effector molecules in the transcriptional regulation of endogenous gene expression. These observations support a route for how epigenetic gene silencing is directed, maintained and passed on as epigenetic memory in human cells. This perspective will highlight the endogenous effector RNAs and mechanism of action whereby non-coding RNAs transcriptionally regulate gene expression in human cells and discuss these recent observations in the context of human evolution.

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Year:  2009        PMID: 19305164      PMCID: PMC2754389          DOI: 10.4161/rna.6.3.8353

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  46 in total

1.  Genetic regulatory mechanisms in the synthesis of proteins.

Authors:  F JACOB; J MONOD
Journal:  J Mol Biol       Date:  1961-06       Impact factor: 5.469

2.  Transcriptional silencing of nonsense codon-containing immunoglobulin minigenes.

Authors:  Marc Bühler; Fabio Mohn; Lukas Stalder; Oliver Mühlemann
Journal:  Mol Cell       Date:  2005-04-29       Impact factor: 17.970

3.  Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells.

Authors:  Jiang Han; Daniel Kim; Kevin V Morris
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

Review 4.  Non-coding RNAs, epigenetics and complexity.

Authors:  Fabrício F Costa
Journal:  Gene       Date:  2008-01-15       Impact factor: 3.688

5.  Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters.

Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

6.  Mobilization-competent Lentiviral Vector-mediated Sustained Transcriptional Modulation of HIV-1 Expression.

Authors:  Anne-Marie W Turner; Justin De La Cruz; Kevin V Morris
Journal:  Mol Ther       Date:  2008-12-09       Impact factor: 11.454

7.  The eukaryotic genome as an RNA machine.

Authors:  Paulo P Amaral; Marcel E Dinger; Tim R Mercer; John S Mattick
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

8.  Small interfering RNA-induced transcriptional gene silencing in human cells.

Authors:  Kevin V Morris; Simon W-L Chan; Steven E Jacobsen; David J Looney
Journal:  Science       Date:  2004-08-05       Impact factor: 47.728

9.  Small interfering RNA directed reversal of urokinase plasminogen activator demethylation inhibits prostate tumor growth and metastasis.

Authors:  Sai Murali Krishna Pulukuri; Jasti S Rao
Journal:  Cancer Res       Date:  2007-07-15       Impact factor: 12.701

10.  Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells.

Authors:  Peter G Hawkins; Sharon Santoso; Christopher Adams; Vasiliki Anest; Kevin V Morris
Journal:  Nucleic Acids Res       Date:  2009-03-20       Impact factor: 16.971

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  19 in total

Review 1.  Long antisense non-coding RNAs and their role in transcription and oncogenesis.

Authors:  Kevin V Morris; Peter K Vogt
Journal:  Cell Cycle       Date:  2010-07-01       Impact factor: 4.534

Review 2.  Epigenetic choreographers of neurogenesis in the adult mammalian brain.

Authors:  Dengke K Ma; Maria Carolina Marchetto; Junjie U Guo; Guo-li Ming; Fred H Gage; Hongjun Song
Journal:  Nat Neurosci       Date:  2010-11       Impact factor: 24.884

Review 3.  Long non-coding RNA targeting and transcriptional de-repression.

Authors:  Marc S Weinberg; Kevin V Morris
Journal:  Nucleic Acid Ther       Date:  2013-02       Impact factor: 5.486

4.  An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription.

Authors:  Sheena Saayman; Amanda Ackley; Anne-Marie W Turner; Marylinda Famiglietti; Alberto Bosque; Matthew Clemson; Vicente Planelles; Kevin V Morris
Journal:  Mol Ther       Date:  2014-02-28       Impact factor: 11.454

Review 5.  The theory of RNA-mediated gene evolution.

Authors:  Kevin V Morris
Journal:  Epigenetics       Date:  2015-01-27       Impact factor: 4.528

Review 6.  Non-coding RNA and antisense RNA. Nature's trash or treasure?

Authors:  Stuart Knowling; Kevin V Morris
Journal:  Biochimie       Date:  2011-08-10       Impact factor: 4.079

Review 7.  The emerging role of RNA in the regulation of gene transcription in human cells.

Authors:  Kevin V Morris
Journal:  Semin Cell Dev Biol       Date:  2011-02-17       Impact factor: 7.727

Review 8.  Epigenetic regulation of neurogenesis in the adult mammalian brain.

Authors:  Jiaqi Sun; Jiawei Sun; Guo-li Ming; Hongjun Song
Journal:  Eur J Neurosci       Date:  2011-03       Impact factor: 3.386

Review 9.  RNA-directed transcriptional gene silencing and activation in human cells.

Authors:  Kevin V Morris
Journal:  Oligonucleotides       Date:  2009-12

10.  Hypomethylation of noncoding DNA regions and overexpression of the long noncoding RNA, AFAP1-AS1, in Barrett's esophagus and esophageal adenocarcinoma.

Authors:  Wenjing Wu; Tushar D Bhagat; Xue Yang; Jee Hoon Song; Yulan Cheng; Rachana Agarwal; John M Abraham; Sariat Ibrahim; Matthias Bartenstein; Zulfiqar Hussain; Masako Suzuki; Yiting Yu; Wei Chen; Charis Eng; John Greally; Amit Verma; Stephen J Meltzer
Journal:  Gastroenterology       Date:  2013-01-16       Impact factor: 22.682

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