Literature DB >> 21333746

The emerging role of RNA in the regulation of gene transcription in human cells.

Kevin V Morris1.   

Abstract

Recent evidence suggests that particular species of non-coding RNAs can modulate gene transcription in human cells. While such observations were in the past relegated to imprinted genes, it is now becoming apparent that several different genes in differentiated cells may be under some form of RNA based regulatory control. Studies carried out to date have begun to discern the mechanism of action whereby non-coding RNAs modulate gene transcription by the targeted recruitment of epigenetic silencing complexes to homology containing loci in the genome. The results of these studies will be considered in detail as well as the implications that a vast array of non-coding RNA based regulatory networks may be operative in human cells.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21333746      PMCID: PMC3130838          DOI: 10.1016/j.semcdb.2011.02.017

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  44 in total

1.  The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation.

Authors:  Francois Fuks; Paul J Hurd; Daniel Wolf; Xinsheng Nan; Adrian P Bird; Tony Kouzarides
Journal:  J Biol Chem       Date:  2002-11-09       Impact factor: 5.157

2.  Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells.

Authors:  Jiang Han; Daniel Kim; Kevin V Morris
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

3.  Mobilization-competent Lentiviral Vector-mediated Sustained Transcriptional Modulation of HIV-1 Expression.

Authors:  Anne-Marie W Turner; Justin De La Cruz; Kevin V Morris
Journal:  Mol Ther       Date:  2008-12-09       Impact factor: 11.454

4.  PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element.

Authors:  Alexander K Ebralidze; Florence C Guibal; Ulrich Steidl; Pu Zhang; Sanghoon Lee; Boris Bartholdy; Meritxell Alberich Jorda; Victoria Petkova; Frank Rosenbauer; Gang Huang; Tajhal Dayaram; Johanna Klupp; Karen B O'Brien; Britta Will; Maarten Hoogenkamp; Katherine L B Borden; Constanze Bonifer; Daniel G Tenen
Journal:  Genes Dev       Date:  2008-08-01       Impact factor: 11.361

5.  Long noncoding RNA as modular scaffold of histone modification complexes.

Authors:  Miao-Chih Tsai; Ohad Manor; Yue Wan; Nima Mosammaparast; Jordon K Wang; Fei Lan; Yang Shi; Eran Segal; Howard Y Chang
Journal:  Science       Date:  2010-07-08       Impact factor: 47.728

6.  The Polycomb group protein EZH2 directly controls DNA methylation.

Authors:  Emmanuelle Viré; Carmen Brenner; Rachel Deplus; Loïc Blanchon; Mario Fraga; Céline Didelot; Lluis Morey; Aleyde Van Eynde; David Bernard; Jean-Marie Vanderwinden; Mathieu Bollen; Manel Esteller; Luciano Di Croce; Yvan de Launoit; François Fuks
Journal:  Nature       Date:  2005-12-14       Impact factor: 49.962

7.  Small interfering RNA-induced transcriptional gene silencing in human cells.

Authors:  Kevin V Morris; Simon W-L Chan; Steven E Jacobsen; David J Looney
Journal:  Science       Date:  2004-08-05       Impact factor: 47.728

Review 8.  Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells.

Authors:  Kevin V Morris
Journal:  Epigenetics       Date:  2009-07-17       Impact factor: 4.528

9.  Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage.

Authors:  Salah Mahmoudi; Sofia Henriksson; Martin Corcoran; Cristina Méndez-Vidal; Klas G Wiman; Marianne Farnebo
Journal:  Mol Cell       Date:  2009-02-27       Impact factor: 17.970

10.  Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes.

Authors:  Hao Wu; Volkan Coskun; Jifang Tao; Wei Xie; Weihong Ge; Kazuaki Yoshikawa; En Li; Yi Zhang; Yi Eve Sun
Journal:  Science       Date:  2010-07-23       Impact factor: 47.728

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  23 in total

1.  Characterization of an HIV-targeted transcriptional gene-silencing RNA in primary cells.

Authors:  Anne-Marie W Turner; Amanda M Ackley; Michael A Matrone; Kevin V Morris
Journal:  Hum Gene Ther       Date:  2012-01-26       Impact factor: 5.695

2.  Transcriptional silencing by hairpin RNAs complementary to a gene promoter.

Authors:  Yongjun Chu; Roya Kalantari; David W Dodd; David R Corey
Journal:  Nucleic Acid Ther       Date:  2012-06       Impact factor: 5.486

Review 3.  Alzheimer's disease and environmental exposure to lead: the epidemiologic evidence and potential role of epigenetics.

Authors:  Kelly M Bakulski; Laura S Rozek; Dana C Dolinoy; Henry L Paulson; Howard Hu
Journal:  Curr Alzheimer Res       Date:  2012-06       Impact factor: 3.498

Review 4.  Cis-acting noncoding RNAs: friends and foes.

Authors:  Sònia Guil; Manel Esteller
Journal:  Nat Struct Mol Biol       Date:  2012-11       Impact factor: 15.369

Review 5.  Long non-coding RNA targeting and transcriptional de-repression.

Authors:  Marc S Weinberg; Kevin V Morris
Journal:  Nucleic Acid Ther       Date:  2013-02       Impact factor: 5.486

6.  Regulation of an antisense RNA with the transition of neonatal to IIb myosin heavy chain during postnatal development and hypothyroidism in rat skeletal muscle.

Authors:  Clay E Pandorf; Weihua Jiang; Anqi X Qin; Paul W Bodell; Kenneth M Baldwin; Fadia Haddad
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2012-01-18       Impact factor: 3.619

7.  An HIV-encoded antisense long noncoding RNA epigenetically regulates viral transcription.

Authors:  Sheena Saayman; Amanda Ackley; Anne-Marie W Turner; Marylinda Famiglietti; Alberto Bosque; Matthew Clemson; Vicente Planelles; Kevin V Morris
Journal:  Mol Ther       Date:  2014-02-28       Impact factor: 11.454

Review 8.  Snapshots: chromatin control of viral infection.

Authors:  David M Knipe; Paul M Lieberman; Jae U Jung; Alison A McBride; Kevin V Morris; Melanie Ott; David Margolis; Amelia Nieto; Michael Nevels; Robin J Parks; Thomas M Kristie
Journal:  Virology       Date:  2013-01-05       Impact factor: 3.616

Review 9.  Evolutionary conservation of long non-coding RNAs; sequence, structure, function.

Authors:  Per Johnsson; Leonard Lipovich; Dan Grandér; Kevin V Morris
Journal:  Biochim Biophys Acta       Date:  2013-10-27

10.  Cellular and molecular basis of intestinal barrier dysfunction in the irritable bowel syndrome.

Authors:  Cristina Martínez; Ana González-Castro; María Vicario; Javier Santos
Journal:  Gut Liver       Date:  2012-07-12       Impact factor: 4.519

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