Literature DB >> 19943804

RNA-directed transcriptional gene silencing and activation in human cells.

Kevin V Morris1.   

Abstract

The overt loss or uncontrolled gain of gene expression is found at some level in virtually every malady afflicting humans. From cancer to HIV-1, the uncontrolled expression or loss of gene expression is prevalent in human diseases. Approaches toward the specific control of gene expression at the transcriptional level could have the potential to revert or reduce disease pathologies. Over the last several years, researchers have developed methodologies that utilize small antisense non-coding RNAs to specifically silence transcription. Only recently has the endogenous molecular pathway usurped by the introduction of these small RNAs to regulate transcription in human cells been defined. Observations suggest that long antisense non-coding RNAs function as the endogenous epigenetic regulators of transcription in human cells, thus explaining why small antisense RNAs were observed early on to silence transcription via directed epigenetic changes at the target loci. The mechanism of action whereby small regulatory RNAs can either turn gene transcription on or off will be discussed as evidence that one day it may be possible to develop therapeutics to regulate gene transcription and ameliorate particular disease conditions.

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Year:  2009        PMID: 19943804      PMCID: PMC2861411          DOI: 10.1089/oli.2009.0212

Source DB:  PubMed          Journal:  Oligonucleotides        ISSN: 1545-4576


  53 in total

1.  Transcriptional silencing and promoter methylation triggered by double-stranded RNA.

Authors:  M F Mette; W Aufsatz; J van der Winden; M A Matzke; A J Matzke
Journal:  EMBO J       Date:  2000-10-02       Impact factor: 11.598

2.  Double-stranded siRNA targeted to the huntingtin gene does not induce DNA methylation.

Authors:  Chang Won Park; Zongyu Chen; Betsy T Kren; Clifford J Steer
Journal:  Biochem Biophys Res Commun       Date:  2004-10-08       Impact factor: 3.575

3.  Inhibiting transcription of chromosomal DNA with antigene peptide nucleic acids.

Authors:  Bethany A Janowski; Kunihiro Kaihatsu; Kenneth E Huffman; Jacob C Schwartz; Rosalyn Ram; Daniel Hardy; Carole R Mendelson; David R Corey
Journal:  Nat Chem Biol       Date:  2005-07-31       Impact factor: 15.040

4.  Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells.

Authors:  Jiang Han; Daniel Kim; Kevin V Morris
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-17       Impact factor: 11.205

5.  Small interfering RNA-induced transcriptional gene silencing in human cells.

Authors:  Kevin V Morris; Simon W-L Chan; Steven E Jacobsen; David J Looney
Journal:  Science       Date:  2004-08-05       Impact factor: 47.728

Review 6.  Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells.

Authors:  Kevin V Morris
Journal:  Epigenetics       Date:  2009-07-17       Impact factor: 4.528

7.  Promoter-targeted siRNAs induce gene silencing of simian immunodeficiency virus (SIV) infection in vitro.

Authors:  Heidi G W Lim; Kazuo Suzuki; David A Cooper; Anthony D Kelleher
Journal:  Mol Ther       Date:  2008-01-29       Impact factor: 11.454

8.  Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells.

Authors:  Sara Napoli; Chiara Pastori; Marco Magistri; Giuseppina M Carbone; Carlo V Catapano
Journal:  EMBO J       Date:  2009-05-21       Impact factor: 11.598

9.  Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage.

Authors:  Salah Mahmoudi; Sofia Henriksson; Martin Corcoran; Cristina Méndez-Vidal; Klas G Wiman; Marianne Farnebo
Journal:  Mol Cell       Date:  2009-02-27       Impact factor: 17.970

10.  The proximal GC-rich region of p16(INK4a) gene promoter plays a role in its transcriptional regulation.

Authors:  Xiuli Wang; Yunpeng Feng; Lina Pan; Yanle Wang; Xin Xu; Jun Lu; Baiqu Huang
Journal:  Mol Cell Biochem       Date:  2007-03-01       Impact factor: 3.842

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  33 in total

Review 1.  Argonaute and the nuclear RNAs: new pathways for RNA-mediated control of gene expression.

Authors:  Keith T Gagnon; David R Corey
Journal:  Nucleic Acid Ther       Date:  2012-01-27       Impact factor: 5.486

Review 2.  Promoter-associated RNAs and promoter-targeted RNAs.

Authors:  Bing-Xue Yan; Jin-Xia Ma
Journal:  Cell Mol Life Sci       Date:  2012-03-14       Impact factor: 9.261

Review 3.  Long antisense non-coding RNAs and their role in transcription and oncogenesis.

Authors:  Kevin V Morris; Peter K Vogt
Journal:  Cell Cycle       Date:  2010-07-01       Impact factor: 4.534

4.  Xenopus furry contributes to release of microRNA gene silencing.

Authors:  Toshiyasu Goto; Akimasa Fukui; Hiroshi Shibuya; Ray Keller; Makoto Asashima
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

5.  LncRNA and mRNA interaction study based on transcriptome profiles reveals potential core genes in the pathogenesis of human glioblastoma multiforme.

Authors:  Yong Yan; Lei Zhang; Ying Jiang; Tao Xu; Qiyong Mei; Hongxiang Wang; Rong Qin; Yongxiang Zou; Guohan Hu; Juxiang Chen; Yicheng Lu
Journal:  J Cancer Res Clin Oncol       Date:  2014-11-07       Impact factor: 4.553

Review 6.  The emerging role of pseudogene expressed non-coding RNAs in cellular functions.

Authors:  Jessica N Groen; David Capraro; Kevin V Morris
Journal:  Int J Biochem Cell Biol       Date:  2014-05-16       Impact factor: 5.085

Review 7.  The theory of RNA-mediated gene evolution.

Authors:  Kevin V Morris
Journal:  Epigenetics       Date:  2015-01-27       Impact factor: 4.528

Review 8.  Epigenetic modifications: basic mechanisms and role in cardiovascular disease.

Authors:  Diane E Handy; Rita Castro; Joseph Loscalzo
Journal:  Circulation       Date:  2011-05-17       Impact factor: 29.690

9.  Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter.

Authors:  Yongjun Chu; Xuan Yue; Scott T Younger; Bethany A Janowski; David R Corey
Journal:  Nucleic Acids Res       Date:  2010-07-30       Impact factor: 16.971

10.  Effect of chemical modifications on modulation of gene expression by duplex antigene RNAs that are complementary to non-coding transcripts at gene promoters.

Authors:  Jonathan K Watts; Dongbo Yu; Klaus Charisse; Christophe Montaillier; Pierre Potier; Muthiah Manoharan; David R Corey
Journal:  Nucleic Acids Res       Date:  2010-04-19       Impact factor: 16.971

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