Literature DB >> 18369136

The eukaryotic genome as an RNA machine.

Paulo P Amaral1, Marcel E Dinger, Tim R Mercer, John S Mattick.   

Abstract

The past few years have revealed that the genomes of all studied eukaryotes are almost entirely transcribed, generating an enormous number of non-protein-coding RNAs (ncRNAs). In parallel, it is increasingly evident that many of these RNAs have regulatory functions. Here, we highlight recent advances that illustrate the diversity of ncRNA control of genome dynamics, cell biology, and developmental programming.

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Year:  2008        PMID: 18369136     DOI: 10.1126/science.1155472

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  267 in total

Review 1.  Genome regulation by long noncoding RNAs.

Authors:  John L Rinn; Howard Y Chang
Journal:  Annu Rev Biochem       Date:  2012       Impact factor: 23.643

2.  A lincRNA switch for embryonic stem cell fate.

Authors:  Liuqing Yang; Chunru Lin; Michael G Rosenfeld
Journal:  Cell Res       Date:  2011-10-25       Impact factor: 25.617

3.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

Authors:  Irma Lozada-Chávez; Peter F Stadler; Sonja J Prohaska
Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

4.  Transcription control by long non-coding RNAs.

Authors:  Tyler Faust; Alan Frankel; Iván D'Orso
Journal:  Transcription       Date:  2012-03-01

5.  RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.

Authors:  Marie-Josée Cros; Antoine de Monte; Jérôme Mariette; Philippe Bardou; Benjamin Grenier-Boley; Daniel Gautheret; Hélène Touzet; Christine Gaspin
Journal:  RNA       Date:  2011-09-23       Impact factor: 4.942

Review 6.  Small RNA-mediated gene regulation in neurodevelopmental disorders.

Authors:  Abrar Qurashi; Peng Jin
Journal:  Curr Psychiatry Rep       Date:  2010-04       Impact factor: 5.285

7.  Protein-coding and non-coding gene expression analysis in differentiating human keratinocytes using a three-dimensional epidermal equivalent.

Authors:  Joseph Mazar; Satyabrata Sinha; Marcel E Dinger; John S Mattick; Ranjan J Perera
Journal:  Mol Genet Genomics       Date:  2010-05-25       Impact factor: 3.291

Review 8.  Roles of DEAD-box proteins in RNA and RNP Folding.

Authors:  Cynthia Pan; Rick Russell
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

9.  Long-range tertiary interactions in single hammerhead ribozymes bias motional sampling toward catalytically active conformations.

Authors:  S Elizabeth McDowell; Jesse M Jun; Nils G Walter
Journal:  RNA       Date:  2010-10-04       Impact factor: 4.942

10.  Effect of (S)-3,5-DHPG on microRNA expression in mouse brain.

Authors:  Theresa A Lusardi; Simon J Thompson; Ian C MacDonald; Jing-Quan Lan; Panos Theofilas; Julie A Saugstad
Journal:  Exp Neurol       Date:  2012-01-28       Impact factor: 5.330

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