Literature DB >> 19285947

Resampling and editing of mischarged tRNA prior to translation elongation.

Jiqiang Ling1, Byung Ran So, Srujana S Yadavalli, Hervé Roy, Shinichiro Shoji, Kurt Fredrick, Karin Musier-Forsyth, Michael Ibba.   

Abstract

Faithful translation of the genetic code depends on the GTPase EF-Tu delivering correctly charged aminoacyl-tRNAs to the ribosome for pairing with cognate codons. The accurate coupling of cognate amino acids and tRNAs by the aminoacyl-tRNA synthetases is achieved through a combination of substrate specificity and product editing. Once released by aminoacyl-tRNA synthetases, both cognate and near-cognate aminoacyl-tRNAs were considered to be committed to ribosomal protein synthesis through their association with EF-Tu. Here we show instead that aminoacyl-tRNAs in ternary complex with EF-Tu*GTP can readily dissociate and rebind to aminoacyl-tRNA synthetases. For mischarged species, this allows resampling by the product editing pathway, leading to a reduction in the overall error rate of aminoacyl-tRNA synthesis. Resampling of mischarged tRNAs was shown to increase the accuracy of translation over ten fold during in vitro protein synthesis, supporting the presence of an additional quality control step prior to translation elongation.

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Year:  2009        PMID: 19285947      PMCID: PMC2944653          DOI: 10.1016/j.molcel.2009.01.031

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  54 in total

Review 1.  Quality control mechanisms during translation.

Authors:  M Ibba; D Söll
Journal:  Science       Date:  1999-12-03       Impact factor: 47.728

Review 2.  Aminoacyl-tRNA synthesis.

Authors:  M Ibba; D Soll
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

3.  Structural and functional mapping of the archaeal multi-aminoacyl-tRNA synthetase complex.

Authors:  Corinne D Hausmann; Michael Ibba
Journal:  FEBS Lett       Date:  2008-06-05       Impact factor: 4.124

4.  Investigation of the transfer of amino acid from a transfer ribonucleic acid synthetase-aminoacyl adenylate complex to transfer ribonucleic acid.

Authors:  E W Eldred; P R Schimmel
Journal:  Biochemistry       Date:  1972-01-04       Impact factor: 3.162

5.  Content of elongation factor Tu in Escherichia coli.

Authors:  A V Furano
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

6.  Transfer RNA-mediated editing in threonyl-tRNA synthetase. The class II solution to the double discrimination problem.

Authors:  A Dock-Bregeon; R Sankaranarayanan; P Romby; J Caillet; M Springer; B Rees; C S Francklyn; C Ehresmann; D Moras
Journal:  Cell       Date:  2000-12-08       Impact factor: 41.582

7.  Misactivated amino acids translocate at similar rates across surface of a tRNA synthetase.

Authors:  T K Nomanbhoy; P R Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

8.  Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase.

Authors:  S Fukai; O Nureki; S Sekine; A Shimada; J Tao; D G Vassylyev; S Yokoyama
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

9.  Hydrolytic editing by a class II aminoacyl-tRNA synthetase.

Authors:  P J Beuning; K Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

10.  The 2 A crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue.

Authors:  S Cusack; A Yaremchuk; M Tukalo
Journal:  EMBO J       Date:  2000-05-15       Impact factor: 11.598

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  48 in total

1.  Kinetic partitioning between synthetic and editing pathways in class I aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps.

Authors:  Nevena Cvetesic; John J Perona; Ita Gruic-Sovulj
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

2.  Transfer RNA's latest port of call.

Authors:  Manuel A S Santos; Omar Orellana; Michael Ibba
Journal:  RNA Biol       Date:  2010-09-01       Impact factor: 4.652

Review 3.  Cellular mechanisms that control mistranslation.

Authors:  Noah M Reynolds; Beth A Lazazzera; Michael Ibba
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

4.  Mechanistic insights into cognate substrate discrimination during proofreading in translation.

Authors:  Tanweer Hussain; Venu Kamarthapu; Shobha P Kruparani; Mandar V Deshmukh; Rajan Sankaranarayanan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-22       Impact factor: 11.205

5.  Is the cellular initiation of translation an exclusive property of the initiator tRNAs?

Authors:  Sunil Shetty; Souvik Bhattacharyya; Umesh Varshney
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 6.  Emergence and evolution.

Authors:  Tammy J Bullwinkle; Michael Ibba
Journal:  Top Curr Chem       Date:  2014

7.  Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.

Authors:  Ziwei Liu; Oscar Vargas-Rodriguez; Yuki Goto; Eva Maria Novoa; Lluís Ribas de Pouplana; Hiroaki Suga; Karin Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

Review 8.  tRNAs: cellular barcodes for amino acids.

Authors:  Rajat Banerjee; Shawn Chen; Kiley Dare; Marla Gilreath; Mette Praetorius-Ibba; Medha Raina; Noah M Reynolds; Theresa Rogers; Hervé Roy; Srujana S Yadavalli; Michael Ibba
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

Review 9.  The balance between pre- and post-transfer editing in tRNA synthetases.

Authors:  Susan A Martinis; Michal T Boniecki
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

10.  Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma.

Authors:  Min Guo; Yeeting E Chong; Ryan Shapiro; Kirk Beebe; Xiang-Lei Yang; Paul Schimmel
Journal:  Nature       Date:  2009-12-10       Impact factor: 49.962

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