Literature DB >> 19255469

Crystallization and preliminary crystallographic analysis of thermophilic cellulase from Fervidobacterium nodosum Rt17-B1.

Baisong Zheng1, Wen Yang, Yuguo Wang, Yan Feng, Zhiyong Lou.   

Abstract

FnCel5A, a thermostable endoglucanase, is a member of glycohydrolase family 5 which catalyzes the hydrolysis of cellulose to glucose in the thermophilic bacterium Fervidobacterium nodosum Rt17-B1. FnCel5A is particularly interesting because of its high thermostability (T(opt) = 353 K, half-life 48 h) and its high specific activity towards carboxymethylcellulose. These properties make FnCel5A an attractive target for protein engineering to improve cellulase activity. In order to resolve the crystal structure of FnCel5A and to gain a better understanding of its biological function, recombinant FnCel5A was expressed, purified and crystallized at 291 K using NaH(2)PO(4)/KH(2)PO(4) as a precipitant. A 2.4 A resolution native data set was collected from a single flash-cooled crystal (100 K) using 20%(v/v) glycerol as a cryoprotectant. These crystals belonged to space group P2(1)2(1)2, with unit-cell parameters a = 53.5, b = 81.7, c = 85.2 A, alpha = beta = gamma = 90 degrees . One molecule is assumed to be present per asymmetric unit, which gives a Matthews coefficient of 2.5 A(3) Da(-1). A data set was also collected to 1.7 A resolution from a selenomethionyl derivative; it belonged to space group P2(1)2(1)2(1) with the same unit-cell parameters as the native crystals.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19255469      PMCID: PMC2650467          DOI: 10.1107/S1744309109001316

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

Review 1.  Cellulase, clostridia, and ethanol.

Authors:  Arnold L Demain; Michael Newcomb; J H David Wu
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

2.  Structure of a full length psychrophilic cellulase from Pseudoalteromonas haloplanktis revealed by X-ray diffraction and small angle X-ray scattering.

Authors:  Sébastien Violot; Nushin Aghajari; Mirjam Czjzek; Georges Feller; Guillaume K Sonan; Patrice Gouet; Charles Gerday; Richard Haser; Véronique Receveur-Bréchot
Journal:  J Mol Biol       Date:  2005-03-25       Impact factor: 5.469

3.  Cloning, sequencing and overexpression of a Rhodothermus marinus gene encoding a thermostable cellulase of glycosyl hydrolase family 12.

Authors:  S Halldórsdóttir; E T Thórólfsdóttir; R Spilliaert; M Johansson; S H Thorbjarnardóttir; A Palsdottir; G O Hreggvidsson; J K Kristjánsson; O Holst; G Eggertsson
Journal:  Appl Microbiol Biotechnol       Date:  1998-03       Impact factor: 4.813

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  New families in the classification of glycosyl hydrolases based on amino acid sequence similarities.

Authors:  B Henrissat; A Bairoch
Journal:  Biochem J       Date:  1993-08-01       Impact factor: 3.857

7.  A common protein fold and similar active site in two distinct families of beta-glycanases.

Authors:  R Dominguez; H Souchon; S Spinelli; Z Dauter; K S Wilson; S Chauvaux; P Béguin; P M Alzari
Journal:  Nat Struct Biol       Date:  1995-07

Review 8.  Outlook for cellulase improvement: screening and selection strategies.

Authors:  Y-H Percival Zhang; Michael E Himmel; Jonathan R Mielenz
Journal:  Biotechnol Adv       Date:  2006-03-27       Impact factor: 14.227

9.  Crystal structure of the catalytic domain of a bacterial cellulase belonging to family 5.

Authors:  V Ducros; M Czjzek; A Belaich; C Gaudin; H P Fierobe; J P Belaich; G J Davies; R Haser
Journal:  Structure       Date:  1995-09-15       Impact factor: 5.006

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  5 in total

Review 1.  Thermostable enzymes as biocatalysts in the biofuel industry.

Authors:  Carl J Yeoman; Yejun Han; Dylan Dodd; Charles M Schroeder; Roderick I Mackie; Isaac K O Cann
Journal:  Adv Appl Microbiol       Date:  2010-03-06       Impact factor: 5.086

2.  Crystal structure of hyperthermophilic endo-β-1,4-glucanase: implications for catalytic mechanism and thermostability.

Authors:  Baisong Zheng; Wen Yang; Xinyu Zhao; Yuguo Wang; Zhiyong Lou; Zihe Rao; Yan Feng
Journal:  J Biol Chem       Date:  2011-11-29       Impact factor: 5.157

3.  CenC, a multidomain thermostable GH9 processive endoglucanase from Clostridium thermocellum: cloning, characterization and saccharification studies.

Authors:  Ikram ul Haq; Fatima Akram; Mahmood Ali Khan; Zahid Hussain; Ali Nawaz; Kaleem Iqbal; Ali Javed Shah
Journal:  World J Microbiol Biotechnol       Date:  2015-08-07       Impact factor: 3.312

4.  Substrate adaptabilities of Thermotogae mannan binding proteins as a function of their evolutionary histories.

Authors:  Nathalie Boucher; Kenneth M Noll
Journal:  Extremophiles       Date:  2016-07-25       Impact factor: 2.395

5.  Optimization of cell culture and cell disruption processes to enhance the production of thermophilic cellulase FnCel5A in E.coli using response surface methodology.

Authors:  Shah Faisal Mohammad; Yan Feng; Guangyu Yang
Journal:  PLoS One       Date:  2019-01-17       Impact factor: 3.240

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.