Literature DB >> 19850924

Mutagenesis alters the catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase.

Binuraj R K Menon1, Paul A Davison, C Neil Hunter, Nigel S Scrutton, Derren J Heyes.   

Abstract

The light-activated enzyme protochlorophyllide oxidoreductase (POR) catalyzes an essential step in the synthesis of the most abundant pigment on Earth, chlorophyll. This unique reaction involves the sequential addition of a hydride and proton across the C17=C18 double bond of protochlorophyllide (Pchlide) by dynamically coupled quantum tunneling and is an important model system for studying the mechanism of hydrogen transfer reactions. In the present work, we have combined site-directed mutagenesis studies with a variety of sensitive spectroscopic and kinetic measurements to provide new insights into the mechanistic role of three universally conserved Cys residues in POR. We show that mutation of Cys-226 dramatically alters the catalytic mechanism of the enzyme. In contrast to wild-type POR, the characteristic charge-transfer intermediate, formed upon hydride transfer from NADPH to the C17 position of Pchlide, is absent in C226S variant enzymes. This suggests a concerted hydrogen transfer mechanism where proton transfer only is rate-limiting. Moreover, Pchlide reduction does not require the network of solvent-coupled conformational changes that play a key role in the proton transfer step of wild-type POR. We conclude that this globally important enzyme is finely tuned to facilitate efficient photochemistry, and the removal of a key interaction with Pchlide in the C226S variants significantly affects the local active site structure in POR, resulting in a shorter donor-acceptor distance for proton transfer.

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Year:  2009        PMID: 19850924      PMCID: PMC2804367          DOI: 10.1074/jbc.M109.071522

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  28 in total

1.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

Authors:  Michael J Knapp; Keith Rickert; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

2.  The role of solvent viscosity in the dynamics of protein conformational changes.

Authors:  A Ansari; C M Jones; E R Henry; J Hofrichter; W A Eaton
Journal:  Science       Date:  1992-06-26       Impact factor: 47.728

3.  Effects of viscosity and temperature on the kinetics of the electron-transfer reaction between the triplet state of zinc cytochrome c and cupriplastocyanin.

Authors:  M M Ivković-Jensen; N M Kostić
Journal:  Biochemistry       Date:  1997-07-01       Impact factor: 3.162

4.  Secondary structure of NADPH: protochlorophyllide oxidoreductase examined by circular dichroism and prediction methods.

Authors:  S J Birve; E Selstam; L B Johansson
Journal:  Biochem J       Date:  1996-07-15       Impact factor: 3.857

Review 5.  POR hits the road: import and assembly of a plastid protein.

Authors:  Henrik Aronsson; Christer Sundqvist; Clas Dahlin
Journal:  Plant Mol Biol       Date:  2003-01       Impact factor: 4.076

6.  Ultrafast enzymatic reaction dynamics in protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; C Neil Hunter; Ivo H M van Stokkum; Rienk van Grondelle; Marie Louise Groot
Journal:  Nat Struct Biol       Date:  2003-06

7.  Identification and characterization of the product release steps within the catalytic cycle of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; C Neil Hunter
Journal:  Biochemistry       Date:  2004-06-29       Impact factor: 3.162

8.  Cryogenic and laser photoexcitation studies identify multiple roles for active site residues in the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Binuraj R K Menon; Jonathan P Waltho; Nigel S Scrutton; Derren J Heyes
Journal:  J Biol Chem       Date:  2009-05-13       Impact factor: 5.157

9.  Covalent labelling of the NADPH: protochlorophyllide oxidoreductase from etioplast membranes with [3H]N-phenylmaleimide.

Authors:  R P Oliver; W T Griffiths
Journal:  Biochem J       Date:  1981-04-01       Impact factor: 3.857

10.  Protochlorophyllide oxidoreductase: "dark" reactions of a light-driven enzyme.

Authors:  Derren J Heyes; Alexander V Ruban; C Neil Hunter
Journal:  Biochemistry       Date:  2003-01-21       Impact factor: 3.162

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  11 in total

Review 1.  Photocatalysis as the 'master switch' of photomorphogenesis in early plant development.

Authors:  Derren J Heyes; Shaowei Zhang; Aoife Taylor; Linus O Johannissen; Samantha J O Hardman; Sam Hay; Nigel S Scrutton
Journal:  Nat Plants       Date:  2021-03-08       Impact factor: 15.793

Review 2.  Engineering oxidoreductases: maquette proteins designed from scratch.

Authors:  Bruce R Lichtenstein; Tammer A Farid; Goutham Kodali; Lee A Solomon; J L Ross Anderson; Molly M Sheehan; Nathan M Ennist; Bryan A Fry; Sarah E Chobot; Chris Bialas; Joshua A Mancini; Craig T Armstrong; Zhenyu Zhao; Tatiana V Esipova; David Snell; Sergei A Vinogradov; Bohdana M Discher; Christopher C Moser; P Leslie Dutton
Journal:  Biochem Soc Trans       Date:  2012-06-01       Impact factor: 5.407

3.  Proteome-wide light/dark modulation of thiol oxidation in cyanobacteria revealed by quantitative site-specific redox proteomics.

Authors:  Jia Guo; Amelia Y Nguyen; Ziyu Dai; Dian Su; Matthew J Gaffrey; Ronald J Moore; Jon M Jacobs; Matthew E Monroe; Richard D Smith; David W Koppenaal; Himadri B Pakrasi; Wei-Jun Qian
Journal:  Mol Cell Proteomics       Date:  2014-08-12       Impact factor: 5.911

4.  A twin-track approach has optimized proton and hydride transfer by dynamically coupled tunneling during the evolution of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Colin Levy; Michiyo Sakuma; David L Robertson; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2011-02-11       Impact factor: 5.157

5.  Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.

Authors:  Chen-Song Dong; Wei-Lun Zhang; Qiao Wang; Yu-Shuai Li; Xiao Wang; Min Zhang; Lin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-31       Impact factor: 11.205

6.  Glutamate 338 is an electrostatic facilitator of C-Co bond breakage in a dynamic/electrostatic model of catalysis by ornithine aminomutase.

Authors:  Binuraj R K Menon; Navya Menon; Karl Fisher; Stephen E J Rigby; David Leys; Nigel S Scrutton
Journal:  FEBS J       Date:  2015-02-12       Impact factor: 5.542

7.  Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae.

Authors:  Heather M Hunsperger; Tejinder Randhawa; Rose Ann Cattolico
Journal:  BMC Evol Biol       Date:  2015-02-10       Impact factor: 3.260

8.  Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function.

Authors:  Olga Chernomor; Lena Peters; Judith Schneidewind; Anita Loeschcke; Esther Knieps-Grünhagen; Fabian Schmitz; Eric von Lieres; Roger Jan Kutta; Vera Svensson; Karl-Erich Jaeger; Thomas Drepper; Arndt von Haeseler; Ulrich Krauss
Journal:  Mol Biol Evol       Date:  2021-03-09       Impact factor: 16.240

9.  Differential Regulation of Duplicate Light-Dependent Protochlorophyllide Oxidoreductases in the Diatom Phaeodactylum tricornutum.

Authors:  Heather M Hunsperger; Christopher J Ford; James S Miller; Rose Ann Cattolico
Journal:  PLoS One       Date:  2016-07-01       Impact factor: 3.240

10.  Multiple active site residues are important for photochemical efficiency in the light-activated enzyme protochlorophyllide oxidoreductase (POR).

Authors:  Binuraj R K Menon; Samantha J O Hardman; Nigel S Scrutton; Derren J Heyes
Journal:  J Photochem Photobiol B       Date:  2016-06-01       Impact factor: 6.252

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