Literature DB >> 24531468

Exploring the atomic structure and conformational flexibility of a 320 Å long engineered viral fiber using X-ray crystallography.

Anshul Bhardwaj1, Sherwood R Casjens2, Gino Cingolani1.   

Abstract

Protein fibers are widespread in nature, but only a limited number of high-resolution structures have been determined experimentally. Unlike globular proteins, fibers are usually recalcitrant to form three-dimensional crystals, preventing single-crystal X-ray diffraction analysis. In the absence of three-dimensional crystals, X-ray fiber diffraction is a powerful tool to determine the internal symmetry of a fiber, but it rarely yields atomic resolution structural information on complex protein fibers. An 85-residue-long minimal coiled-coil repeat unit (MiCRU) was previously identified in the trimeric helical core of tail needle gp26, a fibrous protein emanating from the tail apparatus of the bacteriophage P22 virion. Here, evidence is provided that an MiCRU can be inserted in frame inside the gp26 helical core to generate a rationally extended fiber (gp26-2M) which, like gp26, retains a trimeric quaternary structure in solution. The 2.7 Å resolution crystal structure of this engineered fiber, which measures ∼320 Å in length and is only 20-35 Å wide, was determined. This structure, the longest for a trimeric protein fiber to be determined to such a high resolution, reveals the architecture of 22 consecutive trimerization heptads and provides a framework to decipher the structural determinants for protein fiber assembly, stability and flexibility.

Entities:  

Keywords:  bacteriophage P22; protein engineering; protein fiber; tail needle gp26; α-helical coiled coil

Mesh:

Substances:

Year:  2014        PMID: 24531468      PMCID: PMC3940195          DOI: 10.1107/S1399004713027685

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  49 in total

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Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

5.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

6.  An evolutionarily conserved family of virion tail needles related to bacteriophage P22 gp26: correlation between structural stability and length of the alpha-helical trimeric coiled coil.

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Journal:  J Mol Biol       Date:  2009-05-29       Impact factor: 5.469

7.  A coiled-coil motif that sequesters ions to the hydrophobic core.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-23       Impact factor: 11.205

8.  Structure of phage P22 cell envelope–penetrating needle.

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Journal:  Nat Struct Mol Biol       Date:  2007-12       Impact factor: 15.369

9.  The tip of the tail needle affects the rate of DNA delivery by bacteriophage P22.

Authors:  Justin C Leavitt; Lasha Gogokhia; Eddie B Gilcrease; Anshul Bhardwaj; Gino Cingolani; Sherwood R Casjens
Journal:  PLoS One       Date:  2013-08-12       Impact factor: 3.240

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Journal:  Nat Struct Mol Biol       Date:  2011-04-17       Impact factor: 15.369

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Journal:  J Biol Chem       Date:  2015-11-16       Impact factor: 5.157

2.  An α-helical core encodes the dual functions of the chlamydial protein IncA.

Authors:  Erik Ronzone; Jordan Wesolowski; Laura D Bauler; Anshul Bhardwaj; Ted Hackstadt; Fabienne Paumet
Journal:  J Biol Chem       Date:  2014-10-16       Impact factor: 5.157

Review 3.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

4.  Cryo-EM Structure of a Kinetically Trapped Dodecameric Portal Protein from the Pseudomonas-phage PaP3.

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5.  Exclusion of small terminase mediated DNA threading models for genome packaging in bacteriophage T4.

Authors:  Song Gao; Liang Zhang; Venigalla B Rao
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6.  Ubiquitous Carbohydrate Binding Modules Decorate 936 Lactococcal Siphophage Virions.

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Journal:  Viruses       Date:  2019-07-09       Impact factor: 5.048

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