Literature DB >> 25589408

Methodological advances: the unsung heroes of the GPCR structural revolution.

Eshan Ghosh1, Punita Kumari1, Deepika Jaiman1, Arun K Shukla1.   

Abstract

G protein-coupled receptors (GPCRs) are intricately involved in a diverse array of physiological processes and pathophysiological conditions. They constitute the largest class of drug target in the human genome, which highlights the importance of understanding the molecular basis of their activation, downstream signalling and regulation. In the past few years, considerable progress has been made in our ability to visualize GPCRs and their signalling complexes at the structural level. This is due to a series of methodological developments, improvements in technology and the use of highly innovative approaches, such as protein engineering, new detergents, lipidic cubic phase-based crystallization and microfocus synchrotron beamlines. These advances suggest that an unprecedented amount of structural information will become available in the field of GPCR biology in the coming years.

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Year:  2015        PMID: 25589408     DOI: 10.1038/nrm3933

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  120 in total

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Journal:  Pharmacol Rev       Date:  2005-06       Impact factor: 25.468

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Authors:  Robert J Lefkowitz; Jin-Peng Sun; Arun K Shukla
Journal:  Nat Biotechnol       Date:  2008-02       Impact factor: 54.908

3.  Structure of class C GPCR metabotropic glutamate receptor 5 transmembrane domain.

Authors:  Andrew S Doré; Krzysztof Okrasa; Jayesh C Patel; Maria Serrano-Vega; Kirstie Bennett; Robert M Cooke; James C Errey; Ali Jazayeri; Samir Khan; Ben Tehan; Malcolm Weir; Giselle R Wiggin; Fiona H Marshall
Journal:  Nature       Date:  2014-07-06       Impact factor: 49.962

4.  Structure of the human histamine H1 receptor complex with doxepin.

Authors:  Tatsuro Shimamura; Mitsunori Shiroishi; Simone Weyand; Hirokazu Tsujimoto; Graeme Winter; Vsevolod Katritch; Ruben Abagyan; Vadim Cherezov; Wei Liu; Gye Won Han; Takuya Kobayashi; Raymond C Stevens; So Iwata
Journal:  Nature       Date:  2011-06-22       Impact factor: 49.962

Review 5.  G protein-coupled receptor trafficking in health and disease: lessons learned to prepare for therapeutic mutant rescue in vivo.

Authors:  P Michael Conn; Alfredo Ulloa-Aguirre; Joel Ito; Jo Ann Janovick
Journal:  Pharmacol Rev       Date:  2007-09       Impact factor: 25.468

Review 6.  β-arrestins and G protein-coupled receptor trafficking.

Authors:  Xufan Tian; Dong Soo Kang; Jeffrey L Benovic
Journal:  Handb Exp Pharmacol       Date:  2014

7.  N-terminal T4 lysozyme fusion facilitates crystallization of a G protein coupled receptor.

Authors:  Yaozhong Zou; William I Weis; Brian K Kobilka
Journal:  PLoS One       Date:  2012-10-04       Impact factor: 3.240

8.  Structure and function of an irreversible agonist-β(2) adrenoceptor complex.

Authors:  Daniel M Rosenbaum; Cheng Zhang; Joseph A Lyons; Ralph Holl; David Aragao; Daniel H Arlow; Søren G F Rasmussen; Hee-Jung Choi; Brian T Devree; Roger K Sunahara; Pil Seok Chae; Samuel H Gellman; Ron O Dror; David E Shaw; William I Weis; Martin Caffrey; Peter Gmeiner; Brian K Kobilka
Journal:  Nature       Date:  2011-01-13       Impact factor: 49.962

9.  Structure of the human κ-opioid receptor in complex with JDTic.

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Journal:  Nature       Date:  2012-03-21       Impact factor: 49.962

10.  G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody.

Authors:  Tomoya Hino; Takatoshi Arakawa; Hiroko Iwanari; Takami Yurugi-Kobayashi; Chiyo Ikeda-Suno; Yoshiko Nakada-Nakura; Osamu Kusano-Arai; Simone Weyand; Tatsuro Shimamura; Norimichi Nomura; Alexander D Cameron; Takuya Kobayashi; Takao Hamakubo; So Iwata; Takeshi Murata
Journal:  Nature       Date:  2012-01-29       Impact factor: 49.962

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  62 in total

Review 1.  Identifying ligands at orphan GPCRs: current status using structure-based approaches.

Authors:  Tony Ngo; Irina Kufareva; James Lj Coleman; Robert M Graham; Ruben Abagyan; Nicola J Smith
Journal:  Br J Pharmacol       Date:  2016-03-05       Impact factor: 8.739

Review 2.  Emerging Paradigm of Intracellular Targeting of G Protein-Coupled Receptors.

Authors:  Madhu Chaturvedi; Justin Schilling; Alexandre Beautrait; Michel Bouvier; Jeffrey L Benovic; Arun K Shukla
Journal:  Trends Biochem Sci       Date:  2018-05-04       Impact factor: 13.807

3.  Membrane cholesterol depletion reduces downstream signaling activity of the adenosine A2A receptor.

Authors:  Claire McGraw; Lewen Yang; Ilya Levental; Edward Lyman; Anne Skaja Robinson
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-01-08       Impact factor: 3.747

4.  Evaluating the performance of MM/PBSA for binding affinity prediction using class A GPCR crystal structures.

Authors:  Mei Qian Yau; Abigail L Emtage; Nathaniel J Y Chan; Stephen W Doughty; Jason S E Loo
Journal:  J Comput Aided Mol Des       Date:  2019-04-15       Impact factor: 3.686

5.  Frozen in action: cryo-EM structure of a GPCR-G-protein complex.

Authors:  Mithu Baidya; Hemlata Dwivedi; Arun K Shukla
Journal:  Nat Struct Mol Biol       Date:  2017-06-06       Impact factor: 15.369

6.  Lipid and Protein Transfer between Nanolipoprotein Particles and Supported Lipid Bilayers.

Authors:  Amanda T Dang; Wei He; Daniela B Ivey; Matthew A Coleman; Tonya L Kuhl
Journal:  Langmuir       Date:  2019-09-06       Impact factor: 3.882

7.  Mechanism of Hormone Peptide Activation of a GPCR: Angiotensin II Activated State of AT1R Initiated by van der Waals Attraction.

Authors:  Khuraijam Dhanachandra Singh; Hamiyet Unal; Russell Desnoyer; Sadashiva S Karnik
Journal:  J Chem Inf Model       Date:  2019-01-16       Impact factor: 4.956

Review 8.  Serial Femtosecond Crystallography of G Protein-Coupled Receptors.

Authors:  Benjamin Stauch; Vadim Cherezov
Journal:  Annu Rev Biophys       Date:  2018-03-15       Impact factor: 12.981

9.  An Improved Strategy for Fluorescent Tagging of Membrane Proteins for Overexpression and Purification in Mammalian Cells.

Authors:  Mitra S Rana; Xiyu Wang; Anirban Banerjee
Journal:  Biochemistry       Date:  2018-11-27       Impact factor: 3.162

Review 10.  Chemokines and their receptors: insights from molecular modeling and crystallography.

Authors:  Irina Kufareva
Journal:  Curr Opin Pharmacol       Date:  2016-07-25       Impact factor: 5.547

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