Literature DB >> 19225518

A hierarchical model for evolution of 23S ribosomal RNA.

Konstantin Bokov1, Sergey V Steinberg.   

Abstract

The emergence of the ribosome constituted a pivotal step in the evolution of life. This event happened nearly four billion years ago, and any traces of early stages of ribosome evolution are generally thought to have completely eroded away. Surprisingly, a detailed analysis of the structure of the modern ribosome reveals a concerted and modular scheme of its early evolution.

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Year:  2009        PMID： 19225518     DOI： 10.1038/nature07749

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


  23 in total

1.  Stimulation of the GTPase activity of translation elongation factor G by ribosomal protein L7/12.

Authors:  A Savelsbergh; D Mohr; B Wilden; W Wintermeyer; M V Rodnina
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

2.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.

Authors:  J Harms; F Schluenzen; R Zarivach; A Bashan; S Gat; I Agmon; H Bartels; F Franceschi; A Yonath
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

4.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

Review 5.  Structure and function of the eukaryotic ribosome: the next frontier.

Authors:  Jennifer A Doudna; Virginia L Rath
Journal:  Cell       Date:  2002-04-19       Impact factor: 41.582

6.  A universal mode of helix packing in RNA.

Authors:  E A Doherty; R T Batey; B Masquida; J A Doudna
Journal:  Nat Struct Biol       Date:  2001-04

7.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

8.  Unusual resistance of peptidyl transferase to protein extraction procedures.

Authors:  H F Noller; V Hoffarth; L Zimniak
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

9.  A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome.

Authors:  R R Samaha; R Green; H F Noller
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

10.  Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: analysis of L11 movements.

Authors:  Jennifer M Kavran; Thomas A Steitz
Journal:  J Mol Biol       Date:  2007-06-04       Impact factor: 5.469
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  95 in total

1.  Hypothesis: emergence of translation as a result of RNA helicase evolution.

Authors:  Nikolay Zenkin
Journal:  J Mol Evol       Date:  2012-04-28       Impact factor: 2.395

2.  The origin of the 5S ribosomal RNA molecule could have been caused by a single inverse duplication: strong evidence from its sequences.

Authors:  Sergio Branciamore; Massimo Di Giulio
Journal:  J Mol Evol       Date:  2012-04-11       Impact factor: 2.395

3.  Domain III of the T. thermophilus 23S rRNA folds independently to a near-native state.

Authors:  Shreyas S Athavale; J Jared Gossett; Chiaolong Hsiao; Jessica C Bowman; Eric O'Neill; Eli Hershkovitz; Thanawadee Preeprem; Nicholas V Hud; Roger M Wartell; Stephen C Harvey; Loren Dean Williams
Journal:  RNA       Date:  2012-02-14       Impact factor: 4.942

Review 4.  One core, two shells: bacterial and eukaryotic ribosomes.

Authors:  Sergey Melnikov; Adam Ben-Shem; Nicolas Garreau de Loubresse; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

5.  The transition from noncoded to coded protein synthesis: did coding mRNAs arise from stability-enhancing binding partners to tRNA?

Authors:  Harold Stephen Bernhardt; Warren Perry Tate
Journal:  Biol Direct       Date:  2010-04-09       Impact factor: 4.540

Review 6.  Origin and evolution of the ribosome.

Authors:  George E Fox
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

7.  The origin of modern 5S rRNA: a case of relating models of structural history to phylogenetic data.

Authors:  Feng-Jie Sun; Gustavo Caetano-Anollés
Journal:  J Mol Evol       Date:  2010-06-16       Impact factor: 2.395

8.  Evolution of protein synthesis from an RNA world.

Authors:  Harry F Noller
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-04-01       Impact factor: 10.005

9.  History of the ribosome and the origin of translation.

Authors:  Anton S Petrov; Burak Gulen; Ashlyn M Norris; Nicholas A Kovacs; Chad R Bernier; Kathryn A Lanier; George E Fox; Stephen C Harvey; Roger M Wartell; Nicholas V Hud; Loren Dean Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

10.  An overview of the introns-first theory.

Authors:  David Penny; Marc P Hoeppner; Anthony M Poole; Daniel C Jeffares
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395
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