Literature DB >> 22544085

Hypothesis: emergence of translation as a result of RNA helicase evolution.

Nikolay Zenkin1.   

Abstract

The origin of translation and the genetic code is one of the major mysteries of evolution. The advantage of templated protein synthesis could have been achieved only when the translation apparatus had already become very complex. This means that the translation machinery, as we know it today, must have evolved towards some different essential function that subsequently sub-functionalised into templated protein synthesis. The hypothesis presented here proposes that translation originated as the result of evolution of a primordial RNA helicase, which has been essential for preventing dying out of the RNA organism in sterile double-stranded form. This hypothesis emerges because modern ribosome possesses RNA helicase activity that likely dates back to the RNA world. I hypothesise that codon-anticodon interactions of tRNAs with mRNA evolved as a mechanism used by RNA helicase, the predecessor of ribosomes, to melt RNA duplexes. In this scenario, peptide bond formation emerged to drive unidirectional movement of the helicase via a molecular ratchet mechanism powered by Brownian motion. I propose that protein synthesis appeared as a side product of helicase activity. The first templates for protein synthesis were functional RNAs (ribozymes) that were unwound by the helicase, and the first synthesised proteins were of random or non-sense sequence. I further suggest that genetic code emerged to avoid this randomness. The initial genetic code thus emerged as an assignment of amino acids to codons according to the sequences of the pre-existing RNAs to take advantage of the side products of RNA helicase function.

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Year:  2012        PMID: 22544085     DOI: 10.1007/s00239-012-9503-6

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  37 in total

1.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

2.  Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site.

Authors:  Kurt Fredrick; Harry F Noller
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

Review 3.  The roles of RNA in the synthesis of protein.

Authors:  Peter B Moore; Thomas A Steitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-11-01       Impact factor: 10.005

4.  Specific, rapid synthesis of Phe-RNA by RNA.

Authors:  M Illangasekare; M Yarus
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

5.  Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes.

Authors:  L P Gavrilova; O E Kostiashkina; V E Koteliansky; N M Rutkevitch; A S Spirin
Journal:  J Mol Biol       Date:  1976-03-15       Impact factor: 5.469

6.  Relaxation kinetics of dimer formation by self complementary oligonucleotides.

Authors:  M E Craig; D M Crothers; P Doty
Journal:  J Mol Biol       Date:  1971-12-14       Impact factor: 5.469

Review 7.  Ribosomal translocation: facts and models.

Authors:  A S Spirin
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1985

Review 8.  Attenuation in the control of expression of bacterial operons.

Authors:  C Yanofsky
Journal:  Nature       Date:  1981-02-26       Impact factor: 49.962

9.  Stirring the primordial soup.

Authors:  William R Taylor
Journal:  Nature       Date:  2005-04-07       Impact factor: 49.962

10.  Insights into translational termination from the structure of RF2 bound to the ribosome.

Authors:  Albert Weixlbaumer; Hong Jin; Cajetan Neubauer; Rebecca M Voorhees; Sabine Petry; Ann C Kelley; Venki Ramakrishnan
Journal:  Science       Date:  2008-11-07       Impact factor: 47.728

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  4 in total

1.  RNA secondary structure-dependent termination of transcription.

Authors:  Nikolay Zenkin
Journal:  Cell Cycle       Date:  2013-11-14       Impact factor: 4.534

Review 2.  Revisiting the Extinction of the RNA World.

Authors:  Anthony C Forster
Journal:  Biochemistry       Date:  2022-04-07       Impact factor: 3.321

3.  Origin and evolution of the Peptidyl Transferase Center from proto-tRNAs.

Authors:  Sávio T Farias; Thais G Rêgo; Marco V José
Journal:  FEBS Open Bio       Date:  2014-02-08       Impact factor: 2.693

Review 4.  Reviving the RNA World: An Insight into the Appearance of RNA Methyltransferases.

Authors:  Ajay K Rana; Serge Ankri
Journal:  Front Genet       Date:  2016-06-06       Impact factor: 4.599

  4 in total

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