Literature DB >> 19219986

Substituent effects in cation/pi interactions and electrostatic potentials above the centers of substituted benzenes are due primarily to through-space effects of the substituents.

Steven E Wheeler1, K N Houk.   

Abstract

Substituent effects in cation/pi interactions have been examined using the M05-2X DFT functional and CCSD(T) paired with triple-zeta-quality basis sets. In contrast to popular, intuitive models, trends in substituent effects are explained primarily in terms of direct through-space interactions with the substituents. While there is some scatter in the data, which is attributed to pi polarization, the trend in substituent effects in cation/pi interactions is captured by an additive model in which the substituent is isolated from the aryl ring. Similarly, changes in the electrostatic potential at a point above the center of a substituted benzene arise largely from through-space effects of the substituents; pi polarization is not the dominant underlying cause.

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Year:  2009        PMID: 19219986      PMCID: PMC2787874          DOI: 10.1021/ja809097r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

1.  The Cationminus signpi Interaction.

Authors:  Jennifer C. Ma; Dennis A. Dougherty
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

Review 2.  Physical organic chemistry on the brain.

Authors:  Dennis A Dougherty
Journal:  J Org Chem       Date:  2008-04-16       Impact factor: 4.354

3.  Cation-pi interactions in aromatics of biological and medicinal interest: electrostatic potential surfaces as a useful qualitative guide.

Authors:  S Mecozzi; A P West; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

4.  Is polarization important in cation-pi interactions?

Authors:  E Cubero; F J Luque; M Orozco
Journal:  Proc Natl Acad Sci U S A       Date:  1998-05-26       Impact factor: 11.205

5.  A mechanism for ion selectivity in potassium channels: computational studies of cation-pi interactions.

Authors:  R A Kumpf; D A Dougherty
Journal:  Science       Date:  1993-09-24       Impact factor: 47.728

6.  Cation-pi interactions in structural biology.

Authors:  J P Gallivan; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

7.  Ab initio study of [n.n]paracyclophane (n = 2, 3) complexes with cations: unprecedented through-space substituent effects.

Authors:  Antonio Frontera; David Quiñonero; Carolina Garau; Antoni Costa; Pablo Ballester; Pere M Deyà
Journal:  J Phys Chem A       Date:  2006-04-20       Impact factor: 2.781

8.  Structure-based drug design: exploring the proper filling of apolar pockets at enzyme active sites.

Authors:  Martina Zürcher; François Diederich
Journal:  J Org Chem       Date:  2008-05-30       Impact factor: 4.354

9.  From ab initio quantum mechanics to molecular neurobiology: a cation-pi binding site in the nicotinic receptor.

Authors:  W Zhong; J P Gallivan; Y Zhang; L Li; H A Lester; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

10.  Origin of Substituent Effects in Edge-to-Face Aryl-Aryl Interactions.

Authors:  Steven E Wheeler; K N Houk
Journal:  Mol Phys       Date:  2009-01-01       Impact factor: 1.962

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  28 in total

1.  Energetic factors determining the binding of type I inhibitors to c-Met kinase: experimental studies and quantum mechanical calculations.

Authors:  Zhe Yu; Yu-chi Ma; Jing Ai; Dan-qi Chen; Dong-mei Zhao; Xin Wang; Yue-lei Chen; Mei-yu Geng; Bing Xiong; Mao-sheng Cheng; Jing-Kang Shen
Journal:  Acta Pharmacol Sin       Date:  2013-09-23       Impact factor: 6.150

2.  An interpretation of the phenol nitration mechanism in the gas phase using G3(MP2)//B3-CEP theory.

Authors:  Carlos Murilo Romero Rocha; José Augusto Rosário Rodrigues; Paulo José Samenho Moran; Rogério Custodio
Journal:  J Mol Model       Date:  2014-11-30       Impact factor: 1.810

Review 3.  Mutagenesis computer experiments in pentameric ligand-gated ion channels: the role of simulation tools with different resolution.

Authors:  Alessandro Crnjar; Federico Comitani; Claudio Melis; Carla Molteni
Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

4.  Are anion/pi interactions actually a case of simple charge-dipole interactions?

Authors:  Steven E Wheeler; K N Houk
Journal:  J Phys Chem A       Date:  2010-08-26       Impact factor: 2.781

5.  Competitive/co-operative interactions in acid base sandwich: role of cation vs. substituents.

Authors:  Ayyavoo Kalpana; Lakshminarayanan Akilandeswari
Journal:  J Mol Model       Date:  2017-11-15       Impact factor: 1.810

6.  Synthetic scope, computational chemistry and mechanism of a base induced 5-endo cyclization of benzyl alkynyl sulfides.

Authors:  John M Motto; Alvaro Castillo; Alexander Greer; Laura K Montemayer; Erin E Sheepwash; Adrian L Schwan
Journal:  Tetrahedron       Date:  2011-02-04       Impact factor: 2.457

7.  Cation-π interactions: computational analyses of the aromatic box motif and the fluorination strategy for experimental evaluation.

Authors:  Matthew R Davis; Dennis A Dougherty
Journal:  Phys Chem Chem Phys       Date:  2015-11-21       Impact factor: 3.676

8.  A (U)MP2(full) and (U)CCSD(T) theoretical investigation into the substituent effects on the intermolecular T-shaped F-H...π interactions between HF and LBBL (L = -H, : CO, :NN, -Cl, -CN and -NC).

Authors:  Zhao-ming Yang; Lin Zhang; Li-zhen Chen; Fu-de Ren; Shan Du; Lei Yang
Journal:  J Mol Model       Date:  2011-11-25       Impact factor: 1.810

9.  Investigation of Trimethyllysine Binding by the HP1 Chromodomain via Unnatural Amino Acid Mutagenesis.

Authors:  Stefanie A Baril; Amber L Koenig; Mackenzie W Krone; Katherine I Albanese; Cyndi Qixin He; Ga Young Lee; Kendall N Houk; Marcey L Waters; Eric M Brustad
Journal:  J Am Chem Soc       Date:  2017-11-20       Impact factor: 15.419

10.  The cation-π interaction.

Authors:  Dennis A Dougherty
Journal:  Acc Chem Res       Date:  2012-12-07       Impact factor: 22.384

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