Literature DB >> 26207263

Automatic Population HARDI White Matter Tract Clustering by Label Fusion of Multiple Tract Atlases.

Yan Jin1, Yonggang Shi2, Liang Zhan3, Junning Li, Greig I de Zubicaray, Katie L McMahon, Nicholas G Martin, Margaret J Wright, Paul M Thompson.   

Abstract

Automatic labeling of white matter fibres in diffusion-weighted brain MRI is vital for comparing brain integrity and connectivity across populations, but is challenging. Whole brain tractography generates a vast set of fibres throughout the brain, but it is hard to cluster them into anatomically meaningful tracts, due to wide individual variations in the trajectory and shape of white matter pathways. We propose a novel automatic tract labeling algorithm that fuses information from tractography and multiple hand-labeled fibre tract atlases. As streamline tractography can generate a large number of false positive fibres, we developed a top-down approach to extract tracts consistent with known anatomy, based on a distance metric to multiple hand-labeled atlases. Clustering results from different atlases were fused, using a multi-stage fusion scheme. Our "label fusion" method reliably extracted the major tracts from 105-gradient HARDI scans of 100 young normal adults.

Entities:  

Year:  2012        PMID: 26207263      PMCID: PMC4508862          DOI: 10.1007/978-3-642-33530-3_12

Source DB:  PubMed          Journal:  Multimodal Brain Image Anal (2012)


  13 in total

1.  Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains.

Authors:  Torsten Rohlfing; Robert Brandt; Randolf Menzel; Calvin R Maurer
Journal:  Neuroimage       Date:  2004-04       Impact factor: 6.556

2.  Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas.

Authors:  P Guevara; D Duclap; C Poupon; L Marrakchi-Kacem; P Fillard; D Le Bihan; M Leboyer; J Houenou; J-F Mangin
Journal:  Neuroimage       Date:  2012-03-05       Impact factor: 6.556

3.  Q-ball imaging.

Authors:  David S Tuch
Journal:  Magn Reson Med       Date:  2004-12       Impact factor: 4.668

4.  Reproducibility of quantitative tractography methods applied to cerebral white matter.

Authors:  Setsu Wakana; Arvind Caprihan; Martina M Panzenboeck; James H Fallon; Michele Perry; Randy L Gollub; Kegang Hua; Jiangyang Zhang; Hangyi Jiang; Prachi Dubey; Ari Blitz; Peter van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2007-03-20       Impact factor: 6.556

5.  A Mathematical Framework for Incorporating Anatomical Knowledge in DT-MRI Analysis.

Authors:  Mahnaz Maddah; Lilla Zöllei; W Eric L Grimson; Carl-Fredrik Westin; William M Wells
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2008

6.  Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging.

Authors:  S Mori; B J Crain; V P Chacko; P C van Zijl
Journal:  Ann Neurol       Date:  1999-02       Impact factor: 10.422

7.  Atlas-guided tract reconstruction for automated and comprehensive examination of the white matter anatomy.

Authors:  Yajing Zhang; Jiangyang Zhang; Kenichi Oishi; Andreia V Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Pedro Rosa-Neto; G Bruce Pike; Alan Evans; Arthur W Toga; Roger Woods; John C Mazziotta; Michael I Miller; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2010-05-24       Impact factor: 6.556

8.  A reproducible evaluation of ANTs similarity metric performance in brain image registration.

Authors:  Brian B Avants; Nicholas J Tustison; Gang Song; Philip A Cook; Arno Klein; James C Gee
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

9.  Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participants.

Authors:  Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Jiangyang Zhang; John T Hsu; Michael I Miller; Peter C M van Zijl; Marilyn Albert; Constantine G Lyketsos; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa-Neto; Alan Evans; John Mazziotta; Susumu Mori
Journal:  Neuroimage       Date:  2009-06       Impact factor: 6.556

10.  Unsupervised white matter fiber clustering and tract probability map generation: applications of a Gaussian process framework for white matter fibers.

Authors:  D Wassermann; L Bloy; E Kanterakis; R Verma; R Deriche
Journal:  Neuroimage       Date:  2010-01-14       Impact factor: 6.556

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  17 in total

1.  Multi-modal Registration Improves Group Discrimination in Pediatric Traumatic Brain Injury.

Authors:  Emily L Dennis; Faisal Rashid; Julio Villalon-Reina; Gautam Prasad; Joshua Faskowitz; Talin Babikian; Richard Mink; Christopher Babbitt; Jeffrey Johnson; Christopher C Giza; Robert F Asarnow; Paul M Thompson
Journal:  Brainlesion       Date:  2016-10

2.  MAPPING AGE EFFECTS ALONG FIBER TRACTS IN YOUNG ADULTS.

Authors:  Emily L Dennis; Faisal Rashid; Josh Faskowitz; Yan Jin; Katie L McMahon; Greig I de Zubicaray; Nicholas G Martin; Ian B Hickie; Margaret J Wright; Neda Jahanshad; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

3.  LABELING WHITE MATTER TRACTS IN HARDI BY FUSING MULTIPLE TRACT ATLASES WITH APPLICATIONS TO GENETICS.

Authors:  Yan Jin; Yonggang Shi; Liang Zhan; Greig I de Zubicaray; Katie L McMahon; Nicholas G Martin; Margaret J Wright; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2013-04

Review 4.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

5.  Reprint of: Mapping connectivity in the developing brain.

Authors:  Emily L Dennis; Paul M Thompson
Journal:  Int J Dev Neurosci       Date:  2013-12-02       Impact factor: 2.457

6.  Identification of infants at high-risk for autism spectrum disorder using multiparameter multiscale white matter connectivity networks.

Authors:  Yan Jin; Chong-Yaw Wee; Feng Shi; Kim-Han Thung; Dong Ni; Pew-Thian Yap; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2015-09-14       Impact factor: 5.038

7.  Mapping connectivity in the developing brain.

Authors:  Emily L Dennis; Paul M Thompson
Journal:  Int J Dev Neurosci       Date:  2013-05-27       Impact factor: 2.457

8.  Fiber clustering versus the parcellation-based connectome.

Authors:  Lauren J O'Donnell; Alexandra J Golby; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2013-04-28       Impact factor: 6.556

9.  Diverging white matter trajectories in children after traumatic brain injury: The RAPBI study.

Authors:  Emily L Dennis; Faisal Rashid; Monica U Ellis; Talin Babikian; Roza M Vlasova; Julio E Villalon-Reina; Yan Jin; Alexander Olsen; Richard Mink; Christopher Babbitt; Jeffrey Johnson; Christopher C Giza; Paul M Thompson; Robert F Asarnow
Journal:  Neurology       Date:  2017-03-15       Impact factor: 9.910

10.  Callosal Function in Pediatric Traumatic Brain Injury Linked to Disrupted White Matter Integrity.

Authors:  Emily L Dennis; Monica U Ellis; Sarah D Marion; Yan Jin; Lisa Moran; Alexander Olsen; Claudia Kernan; Talin Babikian; Richard Mink; Christopher Babbitt; Jeffrey Johnson; Christopher C Giza; Paul M Thompson; Robert F Asarnow
Journal:  J Neurosci       Date:  2015-07-15       Impact factor: 6.167

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