Literature DB >> 18180197

A unified framework for clustering and quantitative analysis of white matter fiber tracts.

Mahnaz Maddah1, W Eric L Grimson, Simon K Warfield, William M Wells.   

Abstract

We present a novel approach for joint clustering and point-by-point mapping of white matter fiber pathways. Knowledge of the point correspondence along the fiber pathways is not only necessary for accurate clustering of the trajectories into fiber bundles, but also crucial for any tract-oriented quantitative analysis. We employ an expectation-maximization (EM) algorithm to cluster the trajectories in a gamma mixture model context. The result of clustering is the probabilistic assignment of the fiber trajectories to each cluster, an estimate of the cluster parameters, i.e. spatial mean and variance, and point correspondences. The fiber bundles are modeled by the mean trajectory and its spatial variation. Point-by-point correspondence of the trajectories within a bundle is obtained by constructing a distance map and a label map from each cluster center at every iteration of the EM algorithm. This offers a time-efficient alternative to pairwise curve matching of all trajectories with respect to each cluster center. The proposed method has the potential to benefit from an anatomical atlas of fiber tracts by incorporating it as prior information in the EM algorithm. The algorithm is also capable of handling outliers in a principled way. The presented results confirm the efficiency and effectiveness of the proposed framework for quantitative analysis of diffusion tensor MRI.

Mesh:

Year:  2007        PMID: 18180197      PMCID: PMC2615202          DOI: 10.1016/j.media.2007.10.003

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  22 in total

1.  In vivo fiber tractography using DT-MRI data.

Authors:  P J Basser; S Pajevic; C Pierpaoli; J Duda; A Aldroubi
Journal:  Magn Reson Med       Date:  2000-10       Impact factor: 4.668

2.  Spatial transformations of diffusion tensor magnetic resonance images.

Authors:  D C Alexander; C Pierpaoli; P J Basser; J C Gee
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

3.  Spatial normalization of diffusion tensor MRI using multiple channels.

Authors:  Hae-Jeong Park; Marek Kubicki; Martha E Shenton; Alexandre Guimond; Robert W McCarley; Stephan E Maier; Ron Kikinis; Ferenc A Jolesz; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2003-12       Impact factor: 6.556

4.  White matter tract clustering and correspondence in populations.

Authors:  Lauren O'Donnell; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2005

5.  Analysis of brain white matter via fiber tract modeling.

Authors:  Guido Gerig; Sylvain Gouttard; Isabelle Corouge
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2004

6.  Quantitative diffusion tensor MRI fiber tractography of sensorimotor white matter development in premature infants.

Authors:  Jeffrey I Berman; Pratik Mukherjee; Savannah C Partridge; Steven P Miller; Donna M Ferriero; A James Barkovich; Daniel B Vigneron; Roland G Henry
Journal:  Neuroimage       Date:  2005-10-01       Impact factor: 6.556

7.  White and gray matter development in human fetal, newborn and pediatric brains.

Authors:  Hao Huang; Jiangyang Zhang; Setsu Wakana; Weihong Zhang; Tianbo Ren; Linda J Richards; Paul Yarowsky; Pamela Donohue; Ernest Graham; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2006-08-14       Impact factor: 6.556

8.  White matter damage in Alzheimer's disease assessed in vivo using diffusion tensor magnetic resonance imaging.

Authors:  M Bozzali; A Falini; M Franceschi; M Cercignani; M Zuffi; G Scotti; G Comi; M Filippi
Journal:  J Neurol Neurosurg Psychiatry       Date:  2002-06       Impact factor: 10.154

9.  Age-related alterations in white matter microstructure measured by diffusion tensor imaging.

Authors:  D H Salat; D S Tuch; D N Greve; A J W van der Kouwe; N D Hevelone; A K Zaleta; B R Rosen; B Fischl; S Corkin; H Diana Rosas; A M Dale
Journal:  Neurobiol Aging       Date:  2004-12-19       Impact factor: 4.673

10.  Diffusion tensor imaging of lesions and normal-appearing white matter in multiple sclerosis.

Authors:  D J Werring; C A Clark; G J Barker; A J Thompson; D H Miller
Journal:  Neurology       Date:  1999-05-12       Impact factor: 9.910

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  55 in total

1.  Sheet-like white matter fiber tracts: representation, clustering, and quantitative analysis.

Authors:  Mahnaz Maddah; James V Miller; Edith V Sullivan; Adolf Pfefferbaum; Torsten Rohlfing
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

2.  Tractography segmentation using a hierarchical Dirichlet processes mixture model.

Authors:  Xiaogang Wang; W Eric L Grimson; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2010-08-01       Impact factor: 6.556

3.  Joint reconstruction of white-matter pathways from longitudinal diffusion MRI data with anatomical priors.

Authors:  Anastasia Yendiki; Martin Reuter; Paul Wilkens; H Diana Rosas; Bruce Fischl
Journal:  Neuroimage       Date:  2015-12-21       Impact factor: 6.556

4.  TRActs constrained by UnderLying INfant anatomy (TRACULInA): An automated probabilistic tractography tool with anatomical priors for use in the newborn brain.

Authors:  Lilla Zöllei; Camilo Jaimes; Elie Saliba; P Ellen Grant; Anastasia Yendiki
Journal:  Neuroimage       Date:  2019-05-24       Impact factor: 6.556

5.  Globally optimized fiber tracking and hierarchical clustering -- a unified framework.

Authors:  Xi Wu; Mingyuan Xie; Jiliu Zhou; Adam W Anderson; John C Gore; Zhaohua Ding
Journal:  Magn Reson Imaging       Date:  2012-01-27       Impact factor: 2.546

6.  A Mathematical Framework for Incorporating Anatomical Knowledge in DT-MRI Analysis.

Authors:  Mahnaz Maddah; Lilla Zöllei; W Eric L Grimson; Carl-Fredrik Westin; William M Wells
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2008

7.  Tractography segmentation using a hierarchical Dirichlet processes mixture model.

Authors:  Xiaogang Wang; W Eric L Grimson; Carl-Fredrik Westin
Journal:  Inf Process Med Imaging       Date:  2009

8.  Level set fiber bundle segmentation using spherical harmonic coefficients.

Authors:  Mohammad-Reza Nazem-Zadeh; Esmaeil Davoodi-Bojd; Hamid Soltanian-Zadeh
Journal:  Comput Med Imaging Graph       Date:  2009-10-21       Impact factor: 4.790

9.  Group analysis of DTI fiber tract statistics with application to neurodevelopment.

Authors:  Casey B Goodlett; P Thomas Fletcher; John H Gilmore; Guido Gerig
Journal:  Neuroimage       Date:  2008-11-14       Impact factor: 6.556

10.  Surface-based analysis on shape and fractional anisotropy of white matter tracts in Alzheimer's disease.

Authors:  Anqi Qiu; Kenichi Oishi; Michael I Miller; Constantine G Lyketsos; Susumu Mori; Marilyn Albert
Journal:  PLoS One       Date:  2010-03-22       Impact factor: 3.240

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