Literature DB >> 19204698

Protein promiscuity and its implications for biotechnology.

Irene Nobeli1, Angelo D Favia, Janet M Thornton.   

Abstract

Molecular recognition between proteins and their interacting partners underlies the biochemistry of living organisms. Specificity in this recognition is thought to be essential, whereas promiscuity is often associated with unwanted side effects, poor catalytic properties and errors in biological function. Recent experimental evidence suggests that promiscuity, not only in interactions but also in the actual function of proteins, is not as rare as was previously thought. This has implications not only for our fundamental understanding of molecular recognition and how protein function has evolved over time but also in the realm of biotechnology. Understanding protein promiscuity is becoming increasingly important not only to optimize protein engineering applications in areas as diverse as synthetic biology and metagenomics but also to lower attrition rates in drug discovery programs, identify drug interaction surfaces less susceptible to escape mutations and potentiate the power of polypharmacology.

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Year:  2009        PMID: 19204698     DOI: 10.1038/nbt1519

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  118 in total

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Authors:  U T Bornscheuer; M Pohl
Journal:  Curr Opin Chem Biol       Date:  2001-04       Impact factor: 8.822

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

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Journal:  Curr Opin Struct Biol       Date:  2004-04       Impact factor: 6.809

4.  Robustness, evolvability, and neutrality.

Authors:  Andreas Wagner
Journal:  FEBS Lett       Date:  2005-03-21       Impact factor: 4.124

Review 5.  Protein engineering: opportunities and challenges.

Authors:  Matti Leisola; Ossi Turunen
Journal:  Appl Microbiol Biotechnol       Date:  2007-04-03       Impact factor: 4.813

6.  Exploiting temperature-dependent substrate promiscuity for nucleoside analogue activation by thymidine kinase from Thermotoga maritima.

Authors:  Stefan Lutz; Joseph Lichter; Lingfeng Liu
Journal:  J Am Chem Soc       Date:  2007-06-26       Impact factor: 15.419

7.  The specificity of cross-reactivity: promiscuous antibody binding involves specific hydrogen bonds rather than nonspecific hydrophobic stickiness.

Authors:  Leo C James; Dan S Tawfik
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

8.  Molecular basis of crossreactivity and the limits of antibody-antigen complementarity.

Authors:  J H Arevalo; M J Taussig; I A Wilson
Journal:  Nature       Date:  1993-10-28       Impact factor: 49.962

9.  Evolution of enzymatic activity in the enolase superfamily: functional studies of the promiscuous o-succinylbenzoate synthase from Amycolatopsis.

Authors:  Erika A Taylor Ringia; James B Garrett; James B Thoden; Hazel M Holden; Ivan Rayment; John A Gerlt
Journal:  Biochemistry       Date:  2004-01-13       Impact factor: 3.162

10.  Sub-cellular localization and post-translational modifications of the Plasmodium yoelii enolase suggest moonlighting functions.

Authors:  Ipsita Pal-Bhowmick; Hardeep K Vora; Gotam K Jarori
Journal:  Malar J       Date:  2007-04-16       Impact factor: 2.979

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  152 in total

Review 1.  Ingestion-controlling network: what's language got to do with it?

Authors:  Michael Myslobodsky; Richard Coppola
Journal:  Rev Neurosci       Date:  2010       Impact factor: 4.353

2.  Tracing determinants of dual substrate specificity in glycoside hydrolase family 5.

Authors:  Zhiwei Chen; Gregory D Friedland; Jose H Pereira; Sonia A Reveco; Rosa Chan; Joshua I Park; Michael P Thelen; Paul D Adams; Adam P Arkin; Jay D Keasling; Harvey W Blanch; Blake A Simmons; Kenneth L Sale; Dylan Chivian; Swapnil R Chhabra
Journal:  J Biol Chem       Date:  2012-05-29       Impact factor: 5.157

3.  Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control.

Authors:  Effendi Leonard; Parayil Kumaran Ajikumar; Kelly Thayer; Wen-Hai Xiao; Jeffrey D Mo; Bruce Tidor; Gregory Stephanopoulos; Kristala L J Prather
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

4.  Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation.

Authors:  A D Wilkins; R Lua; S Erdin; R M Ward; O Lichtarge
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

5.  Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network.

Authors:  Ashwini Patil; Kengo Kinoshita; Haruki Nakamura
Journal:  Protein Sci       Date:  2010-08       Impact factor: 6.725

6.  Signal transduction networks in cancer: quantitative parameters influence network topology.

Authors:  David J Klinke
Journal:  Cancer Res       Date:  2010-02-23       Impact factor: 12.701

7.  The 'Tyranny of choices' in the ingestion-controlling network.

Authors:  Michael Myslobodsky
Journal:  Obes Facts       Date:  2009-12-04       Impact factor: 3.942

8.  Missing in action: enzyme functional annotations in biological databases.

Authors:  Nicholas Furnham; John S Garavelli; Rolf Apweiler; Janet M Thornton
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

9.  (19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

Authors:  James M Aramini; Keith Hamilton; Li-Chung Ma; G V T Swapna; Paul G Leonard; John E Ladbury; Robert M Krug; Gaetano T Montelione
Journal:  Structure       Date:  2014-02-27       Impact factor: 5.006

Review 10.  Coverage of protein domain families with structural protein-protein interactions: current progress and future trends.

Authors:  Alexander Goncearenco; Benjamin A Shoemaker; Dachuan Zhang; Alexey Sarychev; Anna R Panchenko
Journal:  Prog Biophys Mol Biol       Date:  2014-06-13       Impact factor: 3.667

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