Literature DB >> 17404726

Protein engineering: opportunities and challenges.

Matti Leisola1, Ossi Turunen.   

Abstract

The extraordinary properties of natural proteins demonstrate that life-like protein engineering is both achievable and valuable. Rapid progress and impressive results have been made towards this goal using rational design and random techniques or a combination of both. However, we still do not have a general theory on how to specify a structure that is suited to a target function nor can we specify a sequence that folds to a target structure. There is also overreliance on the Darwinian blind search to obtain practical results. In the long run, random methods cannot replace insight in constructing life-like proteins. For the near future, however, in enzyme development, we need to rely on a combination of both.

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Year:  2007        PMID: 17404726     DOI: 10.1007/s00253-007-0964-2

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  12 in total

Review 1.  Protein promiscuity and its implications for biotechnology.

Authors:  Irene Nobeli; Angelo D Favia; Janet M Thornton
Journal:  Nat Biotechnol       Date:  2009-02       Impact factor: 54.908

Review 2.  Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology.

Authors:  Laura R Jarboe; Xueli Zhang; Xuan Wang; Jonathan C Moore; K T Shanmugam; Lonnie O Ingram
Journal:  J Biomed Biotechnol       Date:  2010-04-06

3.  Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range.

Authors:  Rui Wu; Albert S Reger; Jian Cao; Andrew M Gulick; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2007-11-21       Impact factor: 3.162

4.  Thermal behaviour and tolerance to ionic liquid [emim]OAc in GH10 xylanase from Thermoascus aurantiacus SL16W.

Authors:  Niwat Chawachart; Sasikala Anbarasan; Samuel Turunen; He Li; Chartchai Khanongnuch; Michael Hummel; Herbert Sixta; Tom Granström; Saisamorn Lumyong; Ossi Turunen
Journal:  Extremophiles       Date:  2014-07-30       Impact factor: 2.395

Review 5.  Indole-3-Glycerol Phosphate Synthase From Mycobacterium tuberculosis: A Potential New Drug Target.

Authors:  Nikolas Esposito; David W Konas; Nina M Goodey
Journal:  Chembiochem       Date:  2021-09-20       Impact factor: 3.461

6.  Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC).

Authors:  Klaus Neuhaus; Richard Landstorfer; Lea Fellner; Svenja Simon; Andrea Schafferhans; Tatyana Goldberg; Harald Marx; Olga N Ozoline; Burkhard Rost; Bernhard Kuster; Daniel A Keim; Siegfried Scherer
Journal:  BMC Genomics       Date:  2016-02-24       Impact factor: 3.969

7.  In silico evidence for functional specialization after genome duplication in yeast.

Authors:  Ossi Turunen; Ralph Seelke; Jed Macosko
Journal:  FEMS Yeast Res       Date:  2009-02       Impact factor: 2.796

8.  Quality matters: extension of clusters of residues with good hydrophobic contacts stabilize (hyper)thermophilic proteins.

Authors:  Prakash Chandra Rathi; Hans Wolfgang Höffken; Holger Gohlke
Journal:  J Chem Inf Model       Date:  2014-01-28       Impact factor: 4.956

9.  Directed Evolution and Resolution Mechanism of 1, 3-Propanediol Oxidoreductase from Klebsiella pneumoniae toward Higher Activity by Error-Prone PCR and Bioinformatics.

Authors:  Wei Jiang; Yuan Zhuang; Shizhen Wang; Baishan Fang
Journal:  PLoS One       Date:  2015-11-03       Impact factor: 3.240

10.  Insight into the functional roles of Glu175 in the hyperthermostable xylanase XYL10C-ΔN through structural analysis and site-saturation mutagenesis.

Authors:  Shuai You; Chun-Chi Chen; Tao Tu; Xiaoyu Wang; Rui Ma; Hui-Yi Cai; Rey-Ting Guo; Hui-Ying Luo; Bin Yao
Journal:  Biotechnol Biofuels       Date:  2018-06-08       Impact factor: 6.040

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