Literature DB >> 15093836

Structure, function and evolution of multidomain proteins.

Christine Vogel1, Matthew Bashton, Nicola D Kerrison, Cyrus Chothia, Sarah A Teichmann.   

Abstract

Proteins are composed of evolutionary units called domains; the majority of proteins consist of at least two domains. These domains and nature of their interactions determine the function of the protein. The roles that combinations of domains play in the formation of the protein repertoire have been found by analysis of domain assignments to genome sequences. Additional findings on the geometry of domains have been gained from examination of three-dimensional protein structures. Future work will require a domain-centric functional classification scheme and efforts to determine structures of domain combinations.

Mesh:

Year:  2004        PMID: 15093836     DOI: 10.1016/j.sbi.2004.03.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  151 in total

1.  Intra-chain 3D segment swapping spawns the evolution of new multidomain protein architectures.

Authors:  András Szilágyi; Yang Zhang; Péter Závodszky
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

2.  A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization.

Authors:  Michael F Seidl; Guido Van den Ackerveken; Francine Govers; Berend Snel
Journal:  Plant Physiol       Date:  2010-11-30       Impact factor: 8.340

3.  Detailed analysis of function divergence in a large and diverse domain superfamily: toward a refined protocol of function classification.

Authors:  Benoit H Dessailly; Oliver C Redfern; Alison L Cuff; Christine A Orengo
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

4.  Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network.

Authors:  Ashwini Patil; Kengo Kinoshita; Haruki Nakamura
Journal:  Protein Sci       Date:  2010-08       Impact factor: 6.725

5.  Recapitulating the Structural Evolution of Redox Regulation in Adenosine 5'-Phosphosulfate Kinase from Cyanobacteria to Plants.

Authors:  Jonathan Herrmann; David Nathin; Soon Goo Lee; Tony Sun; Joseph M Jez
Journal:  J Biol Chem       Date:  2015-08-20       Impact factor: 5.157

6.  Artificial domain duplication replicates evolutionary history of ketol-acid reductoisomerases.

Authors:  Jackson K B Cahn; Sabine Brinkmann-Chen; Andrew R Buller; Frances H Arnold
Journal:  Protein Sci       Date:  2015-12-21       Impact factor: 6.725

7.  Identification of genomic features using microsyntenies of domains: domain teams.

Authors:  Sophie Pasek; Anne Bergeron; Jean-Loup Risler; Alexandra Louis; Emmanuelle Ollivier; Mathieu Raffinot
Journal:  Genome Res       Date:  2005-05-17       Impact factor: 9.043

8.  Conformational change in the C-terminal domain is responsible for the initiation of creatine kinase thermal aggregation.

Authors:  Hua-Wei He; Jun Zhang; Hai-Meng Zhou; Yong-Bin Yan
Journal:  Biophys J       Date:  2005-07-08       Impact factor: 4.033

9.  Prediction of structures of multidomain proteins from structures of the individual domains.

Authors:  Andrew M Wollacott; Alexandre Zanghellini; Paul Murphy; David Baker
Journal:  Protein Sci       Date:  2006-12-22       Impact factor: 6.725

10.  Modeling the evolution of protein domain architectures using maximum parsimony.

Authors:  Jessica H Fong; Lewis Y Geer; Anna R Panchenko; Stephen H Bryant
Journal:  J Mol Biol       Date:  2006-11-10       Impact factor: 5.469

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