Literature DB >> 19191451

Measurements of accurate x-ray scattering data of protein solutions using small stationary sample cells.

Xinguo Hong1, Quan Hao.   

Abstract

In this paper, we report a method of precise in situ x-ray scattering measurements on protein solutions using small stationary sample cells. Although reduction in the radiation damage induced by intense synchrotron radiation sources is indispensable for the correct interpretation of scattering data, there is still a lack of effective methods to overcome radiation-induced aggregation and extract scattering profiles free from chemical or structural damage. It is found that radiation-induced aggregation mainly begins on the surface of the sample cell and grows along the beam path; the diameter of the damaged region is comparable to the x-ray beam size. Radiation-induced aggregation can be effectively avoided by using a two-dimensional scan (2D mode), with an interval as small as 1.5 times the beam size, at low temperature (e.g., 4 degrees C). A radiation sensitive protein, bovine hemoglobin, was used to test the method. A standard deviation of less than 5% in the small angle region was observed from a series of nine spectra recorded in 2D mode, in contrast to the intensity variation seen using the conventional stationary technique, which can exceed 100%. Wide-angle x-ray scattering data were collected at a standard macromolecular diffraction station using the same data collection protocol and showed a good signal/noise ratio (better than the reported data on the same protein using a flow cell). The results indicate that this method is an effective approach for obtaining precise measurements of protein solution scattering.

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Year:  2009        PMID: 19191451      PMCID: PMC2736617          DOI: 10.1063/1.3069285

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  19 in total

1.  Increase in the molecular weight and radius of gyration of apocalmodulin induced by binding of target peptide: evidence for complex formation.

Authors:  Y Izumi; S Kuwamoto; Y Jinbo; H Yoshino
Journal:  FEBS Lett       Date:  2001-04-20       Impact factor: 4.124

2.  The 'fingerprint' that X-rays can leave on structures.

Authors:  R B Ravelli; S M McSweeney
Journal:  Structure       Date:  2000-03-15       Impact factor: 5.006

3.  Structure determination of porcine haemoglobin.

Authors:  T H Lu; K Panneerselvam; Y C Liaw; P Kan; C J Lee
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

4.  Interface sliding as illustrated by the multiple quaternary structures of liganded hemoglobin.

Authors:  T C Mueser; P H Rogers; A Arnone
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

5.  Ab initio phasing using molecular envelope from solution X-ray scattering.

Authors:  Q Hao; F E Dodd; J G Grossmann; S S Hasnain
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

Review 6.  Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective.

Authors:  Peter O'Neill; David L Stevens; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

7.  Radiation damage of protein crystals at cryogenic temperatures between 40 K and 150 K.

Authors:  Tsu-Yi Teng; Keith Moffat
Journal:  J Synchrotron Radiat       Date:  2002-06-30       Impact factor: 2.616

8.  Structural changes in a cryo-cooled protein crystal owing to radiation damage.

Authors:  W P Burmeister
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-03

9.  Specific chemical and structural damage to proteins produced by synchrotron radiation.

Authors:  M Weik; R B Ravelli; G Kryger; S McSweeney; M L Raves; M Harel; P Gros; I Silman; J Kroon; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

Review 10.  Investigation of possible free-radical scavengers and metrics for radiation damage in protein cryocrystallography.

Authors:  James Murray; Elspeth Garman
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

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  5 in total

1.  High-pressure SAXS study of folded and unfolded ensembles of proteins.

Authors:  Martin A Schroer; Michael Paulus; Christoph Jeworrek; Christina Krywka; Saskia Schmacke; Yong Zhai; D C Florian Wieland; Christoph J Sahle; Michael Chimenti; Catherine A Royer; Bertrand Garcia-Moreno; Metin Tolan; Roland Winter
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

2.  Combining solution wide-angle X-ray scattering and crystallography: determination of molecular envelope and heavy-atom sites.

Authors:  Xinguo Hong; Quan Hao
Journal:  J Appl Crystallogr       Date:  2009-02-07       Impact factor: 3.304

3.  Small-angle solution scattering using the mixed-mode pixel array detector.

Authors:  Lucas J Koerner; Richard E Gillilan; Katherine S Green; Suntao Wang; Sol M Gruner
Journal:  J Synchrotron Radiat       Date:  2010-12-08       Impact factor: 2.616

4.  A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS.

Authors:  Jesse B Hopkins; Andrea M Katz; Steve P Meisburger; Matthew A Warkentin; Robert E Thorne; Lois Pollack
Journal:  J Appl Crystallogr       Date:  2015-01-30       Impact factor: 3.304

5.  Breaking the radiation damage limit with Cryo-SAXS.

Authors:  Steve P Meisburger; Matthew Warkentin; Huimin Chen; Jesse B Hopkins; Richard E Gillilan; Lois Pollack; Robert E Thorne
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

  5 in total

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