Literature DB >> 26089749

A microfabricated fixed path length silicon sample holder improves background subtraction for cryoSAXS.

Jesse B Hopkins1, Andrea M Katz2, Steve P Meisburger2, Matthew A Warkentin1, Robert E Thorne1, Lois Pollack2.   

Abstract

The application of small-angle X-ray scattering (SAXS) for high-throughput characterization of biological macromolecules in solution is limited by radiation damage. By cryocooling samples, radiation damage and required sample volumes can be reduced by orders of magnitude. However, the challenges of reproducibly creating the identically sized vitrified samples necessary for conventional background subtraction limit the widespread adoption of this method. Fixed path length silicon sample holders for cryoSAXS have been microfabricated to address these challenges. They have low background scattering and X-ray absorption, require only 640 nl of sample, and allow reproducible sample cooling. Data collected in the sample holders from a nominal illuminated sample volume of 2.5 nl are reproducible down to q ≃ 0.02 Å-1, agree with previous cryoSAXS work and are of sufficient quality for reconstructions that match measured crystal structures. These sample holders thus allow faster, more routine cryoSAXS data collection. Additional development is required to reduce sample fracturing and improve data quality at low q.

Entities:  

Keywords:  100 K; biological small-angle X-ray scattering; cryoSAXS; fixed path length; sample holders; solution scattering

Year:  2015        PMID: 26089749      PMCID: PMC4453169          DOI: 10.1107/S1600576714027782

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  19 in total

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Authors:  G M Fahy; J Saur; R J Williams
Journal:  Cryobiology       Date:  1990-10       Impact factor: 2.487

Review 2.  Structural characterization of proteins and complexes using small-angle X-ray solution scattering.

Authors:  Haydyn D T Mertens; Dmitri I Svergun
Journal:  J Struct Biol       Date:  2010-06-15       Impact factor: 2.867

3.  Micropore x-ray optics using anisotropic wet etching of (110) silicon wafers.

Authors:  Yuichiro Ezoe; Masaki Koshiishi; Makoto Mita; Kazuhisa Mitsuda; Akio Hoshino; Yoshitaka Ishisaki; Zhen Yang; Takayuki Takano; Ryutaro Maeda
Journal:  Appl Opt       Date:  2006-12-10       Impact factor: 1.980

4.  The Effect of Temperature Gradients on Stress Development During Cryopreservation via Vitrification.

Authors:  Paul S Steif; Matthew C Palastro; Yoed Rabin
Journal:  Cell Preserv Technol       Date:  2007

5.  Structural Characteristics in Protein Hydration Investigated by Cryogenic X-ray Crystal Structure Analyses.

Authors:  Masayoshi Nakasako
Journal:  J Biol Phys       Date:  2002-06       Impact factor: 1.365

6.  Breaking the radiation damage limit with Cryo-SAXS.

Authors:  Steve P Meisburger; Matthew Warkentin; Huimin Chen; Jesse B Hopkins; Richard E Gillilan; Lois Pollack; Robert E Thorne
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

7.  Factors affecting the survival of mouse embryos cryopreserved by vitrification.

Authors:  W F Rall
Journal:  Cryobiology       Date:  1987-10       Impact factor: 2.487

8.  Fluctuation x-ray scattering from biological particles in frozen solution by using synchrotron radiation.

Authors:  Z Kam; M H Koch; J Bordas
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

9.  Fracture formation in vitrified thin films of cryoprotectants.

Authors:  Yoed Rabin; Paul S Steif; Katherine C Hess; Jorge L Jimenez-Rios; Matthew C Palastro
Journal:  Cryobiology       Date:  2006-06-19       Impact factor: 2.487

10.  DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering.

Authors:  Daniel Franke; Dmitri I Svergun
Journal:  J Appl Crystallogr       Date:  2009-01-24       Impact factor: 3.304

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  3 in total

1.  Quantifying radiation damage in biomolecular small-angle X-ray scattering.

Authors:  Jesse B Hopkins; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2016-05-04       Impact factor: 3.304

2.  Development of tools to automate quantitative analysis of radiation damage in SAXS experiments.

Authors:  Jonathan C Brooks-Bartlett; Rebecca A Batters; Charles S Bury; Edward D Lowe; Helen Mary Ginn; Adam Round; Elspeth F Garman
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

3.  Density and electron density of aqueous cryoprotectant solutions at cryogenic temperatures for optimized cryoprotection and diffraction contrast.

Authors:  Timothy J Tyree; Ritwik Dan; Robert E Thorne
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-27       Impact factor: 7.652

  3 in total

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