Literature DB >> 19173569

Vibrational dynamics of iron in cytochrome C.

Bogdan M Leu1, Tom H Ching, Jiyong Zhao, Wolfgang Sturhahn, E Ercan Alp, J Timothy Sage.   

Abstract

Nuclear resonance vibrational spectroscopy (NRVS) and Raman spectroscopy on (54)Fe- and (57)Fe-enriched cytochrome c (cyt c) identify multiple bands involving vibrations of the heme Fe. Comparison with predictions from Fe isotope shifts reveals that 70% of the NRVS signal in the 300-450 cm(-1) frequency range corresponds to vibrations resolved in Soret-enhanced Raman spectra. This frequency range dominates the "stiffness", an effective force constant determined by the Fe vibrational density of states (VDOS), which measures the strength of nearest-neighbor interactions with Fe. The stiffness of the low-spin Fe environment in both oxidation states of cyt c significantly exceeds that for the high-spin Fe in deoxymyoglobin, where the 200-300 cm(-1) frequency range dominates the VDOS. This situation is reflected in the shorter Fe-ligand bond lengths in the former with respect to the latter. The longer Fe-S(Met80) in oxidized cyt c with respect to reduced cyt c leads to a decrease in the stiffness of the iron environment upon oxidation. Comparison with NRVS measurements allows us to assess assignments for vibrational modes resolved in this region of the heme Raman spectrum. We consider the possibility that the 372 cm(-1) band in reduced cyt c involves the Fe-S(Met80) bond.

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Year:  2009        PMID: 19173569     DOI: 10.1021/jp806574t

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

1.  Spectroscopic identification of reactive porphyrin motions.

Authors:  Alexander Barabanschikov; Alexander Demidov; Minoru Kubo; Paul M Champion; J Timothy Sage; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

2.  Heme-protein vibrational couplings in cytochrome c provide a dynamic link that connects the heme-iron and the protein surface.

Authors:  Mary Grace I Galinato; Jesse G Kleingardner; Sarah E J Bowman; E Ercan Alp; Jiyong Zhao; Kara L Bren; Nicolai Lehnert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-22       Impact factor: 11.205

Review 3.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

4.  Evidence of protein collective motions on the picosecond timescale.

Authors:  Yunfen He; J-Y Chen; J R Knab; Wenjun Zheng; A G Markelz
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

5.  NRVS for Fe in Biology: Experiment and Basic Interpretation.

Authors:  Leland B Gee; Hongxin Wang; Stephen P Cramer
Journal:  Methods Enzymol       Date:  2017-12-16       Impact factor: 1.600

6.  Effects of imidazole deprotonation on vibrational spectra of high-spin iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Qian Peng; Nathan J Silvernail; Alexander Barabanschikov; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-03-07       Impact factor: 5.165

7.  Mechanisms of mitochondrial holocytochrome c synthase and the key roles played by cysteines and histidine of the heme attachment site, Cys-XX-Cys-His.

Authors:  Shalon E Babbitt; Brian San Francisco; Deanna L Mendez; Gudrun S Lukat-Rodgers; Kenton R Rodgers; Eric C Bretsnyder; Robert G Kranz
Journal:  J Biol Chem       Date:  2014-08-28       Impact factor: 5.157

8.  Quantitative vibrational dynamics of the metal site in a tin porphyrin: an IR, NRVS, and DFT study.

Authors:  Bogdan M Leu; Marek Z Zgierski; Christian Bischoff; Ming Li; Michael Y Hu; Jiyong Zhao; Steve W Martin; Esen Ercan Alp; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-08-20       Impact factor: 5.165

9.  Nuclear resonance vibrational spectroscopy (NRVS) of rubredoxin and MoFe protein crystals.

Authors:  Yisong Guo; Eric Brecht; Kristen Aznavour; Jay C Nix; Yuming Xiao; Hongxin Wang; Simon J George; Robert Bau; Stephen Keable; John W Peters; Michael W W Adams; Francis Jenney; Wolfgang Sturhahn; Ercan E Alp; Jiyong Zhao; Yoshitaka Yoda; Stephen P Cramer
Journal:  Hyperfine Interact       Date:  2013-12

10.  Effects of protein structure on iron-polypeptide vibrational dynamic coupling in cytochrome c.

Authors:  Mary Grace I Galinato; Sarah E J Bowman; Jesse G Kleingardner; Sherri Martin; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; Kara L Bren; Nicolai Lehnert
Journal:  Biochemistry       Date:  2015-01-16       Impact factor: 3.162

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