Literature DB >> 25170082

Mechanisms of mitochondrial holocytochrome c synthase and the key roles played by cysteines and histidine of the heme attachment site, Cys-XX-Cys-His.

Shalon E Babbitt1, Brian San Francisco1, Deanna L Mendez1, Gudrun S Lukat-Rodgers2, Kenton R Rodgers2, Eric C Bretsnyder1, Robert G Kranz3.   

Abstract

Mitochondrial cytochrome c assembly requires the covalent attachment of heme by thioether bonds between heme vinyl groups and a conserved CXXCH motif of cytochrome c/c1. The enzyme holocytochrome c synthase (HCCS) binds heme and apocytochrome c substrate to catalyze this attachment, subsequently releasing holocytochrome c for proper folding to its native structure. We address mechanisms of assembly using a functional Escherichia coli recombinant system expressing human HCCS. Human cytochrome c variants with individual cysteine, histidine, double cysteine, and triple cysteine/histidine substitutions (of CXXCH) were co-purified with HCCS. Single and double mutants form a complex with HCCS but not the triple mutant. Resonance Raman and UV-visible spectroscopy support the proposal that heme puckering induced by both thioether bonds facilitate release of holocytochrome c from the complex. His-19 (of CXXCH) supplies the second axial ligand to heme in the complex, the first axial ligand was previously shown to be from HCCS residue His-154. Substitutions of His-19 in cytochrome c to seven other residues (Gly, Ala, Met, Arg, Lys, Cys, and Tyr) were used with various approaches to establish other roles played by His-19. Three roles for His-19 in HCCS-mediated assembly are suggested: (i) to provide the second axial ligand to the heme iron in preparation for covalent attachment; (ii) to spatially position the two cysteinyl sulfurs adjacent to the two heme vinyl groups for thioether formation; and (iii) to aid in release of the holocytochrome c from the HCCS active site. Only H19M is able to carry out these three roles, albeit at lower efficiencies than the natural His-19.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Cytochrome c; Heme; Histidine; Mitochondria; Raman Spectroscopy

Mesh:

Substances:

Year:  2014        PMID: 25170082      PMCID: PMC4200240          DOI: 10.1074/jbc.M114.593509

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

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2.  Site-directedly mutated human cytochrome c which retains heme c via only one thioether bond.

Authors:  Y Tanaka; I Kubota; T Amachi; H Yoshizumi; H Matsubara
Journal:  J Biochem       Date:  1990-07       Impact factor: 3.387

3.  On the specificity of cytochrome c synthetase in recognition of the amino acid sequence of apocytochrome c.

Authors:  C Visco; H Taniuchi; B S Berlett
Journal:  J Biol Chem       Date:  1985-05-25       Impact factor: 5.157

4.  Ferricytochrome c. I. General features of the horse and bonito proteins at 2.8 A resolution.

Authors:  R E Dickerson; T Takano; D Eisenberg; O B Kallai; L Samson; A Cooper; E Margoliash
Journal:  J Biol Chem       Date:  1971-03-10       Impact factor: 5.157

5.  Simultaneous determination of hemes a, b, and c from pyridine hemochrome spectra.

Authors:  E A Berry; B L Trumpower
Journal:  Anal Biochem       Date:  1987-02-15       Impact factor: 3.365

6.  Replacement of the proximal ligand of sperm whale myoglobin with free imidazole in the mutant His-93-->Gly.

Authors:  D Barrick
Journal:  Biochemistry       Date:  1994-05-31       Impact factor: 3.162

7.  Structure determination and analysis of yeast iso-2-cytochrome c and a composite mutant protein.

Authors:  M E Murphy; B T Nall; G D Brayer
Journal:  J Mol Biol       Date:  1992-09-05       Impact factor: 5.469

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Authors:  Federico I Rosell; A Grant Mauk
Journal:  Biochemistry       Date:  2002-06-18       Impact factor: 3.162

9.  Molecular cloning and characterization of the Saccharomyces cerevisiae CYT2 gene encoding cytochrome-c1-heme lyase.

Authors:  A Zollner; G Rödel; A Haid
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Authors:  M E Dumont; J F Ernst; D M Hampsey; F Sherman
Journal:  EMBO J       Date:  1987-01       Impact factor: 11.598

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  11 in total

1.  Biosynthesis of Single Thioether c-Type Cytochromes Provides Insight into Mechanisms Intrinsic to Holocytochrome c Synthase (HCCS).

Authors:  Shalon E Babbitt; Jennifer Hsu; Deanna L Mendez; Robert G Kranz
Journal:  Biochemistry       Date:  2017-06-26       Impact factor: 3.162

2.  Engineered holocytochrome c synthases that biosynthesize new cytochromes c.

Authors:  Deanna L Mendez; Shalon E Babbitt; Jeremy D King; John D'Alessandro; Michael B Watson; Robert E Blankenship; Liviu M Mirica; Robert G Kranz
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Review 3.  Mitochondrial cytochrome c biogenesis: no longer an enigma.

Authors:  Shalon E Babbitt; Molly C Sutherland; Brian San Francisco; Deanna L Mendez; Robert G Kranz
Journal:  Trends Biochem Sci       Date:  2015-06-11       Impact factor: 13.807

4.  Molecular Basis Behind Inability of Mitochondrial Holocytochrome c Synthase to Mature Bacterial Cytochromes: DEFINING A CRITICAL ROLE FOR CYTOCHROME c α HELIX-1.

Authors:  Shalon E Babbitt; Jennifer Hsu; Robert G Kranz
Journal:  J Biol Chem       Date:  2016-07-06       Impact factor: 5.157

5.  Effects of protein structure on iron-polypeptide vibrational dynamic coupling in cytochrome c.

Authors:  Mary Grace I Galinato; Sarah E J Bowman; Jesse G Kleingardner; Sherri Martin; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp; Kara L Bren; Nicolai Lehnert
Journal:  Biochemistry       Date:  2015-01-16       Impact factor: 3.162

6.  Structure-Function Analysis of the Bifunctional CcsBA Heme Exporter and Cytochrome c Synthetase.

Authors:  Molly C Sutherland; Nathan L Tran; Dustin E Tillman; Joshua M Jarodsky; Jason Yuan; Robert G Kranz
Journal:  mBio       Date:  2018-12-18       Impact factor: 7.867

Review 7.  From Synthesis to Utilization: The Ins and Outs of Mitochondrial Heme.

Authors:  Samantha A Swenson; Courtney M Moore; Jason R Marcero; Amy E Medlock; Amit R Reddi; Oleh Khalimonchuk
Journal:  Cells       Date:  2020-02-29       Impact factor: 6.600

8.  Architecture of the membrane-bound cytochrome c heme lyase CcmF.

Authors:  Anton Brausemann; Lin Zhang; Lorena Ilcu; Oliver Einsle
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9.  Calpain-mediated protein targets in cardiac mitochondria following ischemia-reperfusion.

Authors:  Ling Li; Jeremy Thompson; Ying Hu; Edward J Lesnefsky; Belinda Willard; Qun Chen
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Review 10.  Down the Iron Path: Mitochondrial Iron Homeostasis and Beyond.

Authors:  Jonathan V Dietz; Jennifer L Fox; Oleh Khalimonchuk
Journal:  Cells       Date:  2021-08-25       Impact factor: 6.600

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