Literature DB >> 19162018

The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.

Takeshi Hiromoto1, Kenichi Ataka, Oliver Pilak, Sonja Vogt, Marco Salomone Stagni, Wolfram Meyer-Klaucke, Eberhard Warkentin, Rudolf K Thauer, Seigo Shima, Ulrich Ermler.   

Abstract

[Fe]-hydrogenase is one of three types of enzymes known to activate H(2). Crystal structure analysis recently revealed that its active site iron is ligated square-pyramidally by Cys176-sulfur, two CO, an "unknown" ligand and the sp(2)-hybridized nitrogen of a unique iron-guanylylpyridinol-cofactor. We report here on the structure of the C176A mutated enzyme crystallized in the presence of dithiothreitol (DTT). It suggests an iron center octahedrally coordinated by one DTT-sulfur and one DTT-oxygen, two CO, the 2-pyridinol's nitrogen and the 2-pyridinol's 6-formylmethyl group in an acyl-iron ligation. This result led to a re-interpretation of the iron ligation in the wild-type.

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Year:  2009        PMID: 19162018     DOI: 10.1016/j.febslet.2009.01.017

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  16 in total

Review 1.  Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides.

Authors:  David Schilter; James M Camara; Mioy T Huynh; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  Chem Rev       Date:  2016-06-29       Impact factor: 60.622

2.  Identification and characterization of a novel member of the radical AdoMet enzyme superfamily and implications for the biosynthesis of the Hmd hydrogenase active site cofactor.

Authors:  Shawn E McGlynn; Eric S Boyd; Eric M Shepard; Rachel K Lange; Robin Gerlach; Joan B Broderick; John W Peters
Journal:  J Bacteriol       Date:  2009-11-06       Impact factor: 3.490

Review 3.  Radical S-adenosylmethionine enzymes.

Authors:  Joan B Broderick; Benjamin R Duffus; Kaitlin S Duschene; Eric M Shepard
Journal:  Chem Rev       Date:  2014-01-29       Impact factor: 60.622

4.  Structural and functional synthetic model of mono-iron hydrogenase featuring an anthracene scaffold.

Authors:  Junhyeok Seo; Taylor A Manes; Michael J Rose
Journal:  Nat Chem       Date:  2017-01-23       Impact factor: 24.427

Review 5.  Nitrogen fixation and hydrogen metabolism in cyanobacteria.

Authors:  Hermann Bothe; Oliver Schmitz; M Geoffrey Yates; William E Newton
Journal:  Microbiol Mol Biol Rev       Date:  2010-12       Impact factor: 11.056

6.  The iron-site structure of [Fe]-hydrogenase and model systems: an X-ray absorption near edge spectroscopy study.

Authors:  Marco Salomone-Stagni; Francesco Stellato; C Matthew Whaley; Sonja Vogt; Silvia Morante; Seigo Shima; Thomas B Rauchfuss; Wolfram Meyer-Klaucke
Journal:  Dalton Trans       Date:  2010-01-28       Impact factor: 4.390

Review 7.  Radical S-adenosyl-L-methionine chemistry in the synthesis of hydrogenase and nitrogenase metal cofactors.

Authors:  Amanda S Byer; Eric M Shepard; John W Peters; Joan B Broderick
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

8.  Iron acyl thiolato carbonyls: structural models for the active site of the [Fe]-hydrogenase (Hmd).

Authors:  Aaron M Royer; Marco Salomone-Stagni; Thomas B Rauchfuss; Wolfram Meyer-Klaucke
Journal:  J Am Chem Soc       Date:  2010-11-09       Impact factor: 15.419

Review 9.  Structure-function relationships of anaerobic gas-processing metalloenzymes.

Authors:  Juan C Fontecilla-Camps; Patricia Amara; Christine Cavazza; Yvain Nicolet; Anne Volbeda
Journal:  Nature       Date:  2009-08-13       Impact factor: 49.962

10.  Reconstitution of [Fe]-hydrogenase using model complexes.

Authors:  Seigo Shima; Dafa Chen; Tao Xu; Matthew D Wodrich; Takashi Fujishiro; Katherine M Schultz; Jörg Kahnt; Kenichi Ataka; Xile Hu
Journal:  Nat Chem       Date:  2015-11-02       Impact factor: 24.427

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