Literature DB >> 19675641

Structure-function relationships of anaerobic gas-processing metalloenzymes.

Juan C Fontecilla-Camps1, Patricia Amara, Christine Cavazza, Yvain Nicolet, Anne Volbeda.   

Abstract

Reactions involving H(2), N(2), CO, CO(2) and CH(4) are likely to have been central to the origin of life. This is indicated by the active-site structures of the enzymes involved, which are often reminiscent of minerals. Through the combined efforts of protein crystallography, various types of spectroscopy, theoretical calculations and model chemistry, it has been possible to put forward plausible mechanisms for gas-based metabolism by extant microorganisms. Although the reactions are based on metal centres, the protein matrix regulates reactivity and substrate and product trafficking through internal pathways, specific ligation and dielectricity.

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Year:  2009        PMID: 19675641     DOI: 10.1038/nature08299

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  91 in total

1.  A quantum chemical study of the reaction mechanism of acetyl-coenzyme a synthase.

Authors:  Patricia Amara; Anne Volbeda; Juan Carlos Fontecilla-Camps; Martin J Field
Journal:  J Am Chem Soc       Date:  2005-03-02       Impact factor: 15.419

2.  Structural insights into HypB, a GTP-binding protein that regulates metal binding.

Authors:  Raphael Gasper; Andrea Scrima; Alfred Wittinghofer
Journal:  J Biol Chem       Date:  2006-06-28       Impact factor: 5.157

3.  From volcanic origins of chemoautotrophic life to Bacteria, Archaea and Eukarya.

Authors:  Günter Wächtershäuser
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-10-29       Impact factor: 6.237

4.  Structure of the alpha2epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex.

Authors:  Weimin Gong; Bing Hao; Zhiyi Wei; Donald J Ferguson; Thomas Tallant; Joseph A Krzycki; Michael K Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-09       Impact factor: 11.205

5.  HydF as a scaffold protein in [FeFe] hydrogenase H-cluster biosynthesis.

Authors:  Shawn E McGlynn; Eric M Shepard; Mark A Winslow; Anatoli V Naumov; Kaitlin S Duschene; Matthew C Posewitz; William E Broderick; Joan B Broderick; John W Peters
Journal:  FEBS Lett       Date:  2008-05-22       Impact factor: 4.124

6.  The nitrogenase system from Azotobacter: two-enzyme requirement for N2 reduction, ATP-dependent H2 evolution, and ATP hydrolysis.

Authors:  W A Bulen; J R LeComte
Journal:  Proc Natl Acad Sci U S A       Date:  1966-09       Impact factor: 11.205

7.  On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding.

Authors:  W Grabarse; F Mahlert; E C Duin; M Goubeaud; S Shima; R K Thauer; V Lamzin; U Ermler
Journal:  J Mol Biol       Date:  2001-05-25       Impact factor: 5.469

8.  Isolation of an iron-molybdenum cofactor from nitrogenase.

Authors:  V K Shah; W J Brill
Journal:  Proc Natl Acad Sci U S A       Date:  1977-08       Impact factor: 11.205

9.  A nickel hydride complex in the active site of methyl-coenzyme m reductase: implications for the catalytic cycle.

Authors:  Jeffrey Harmer; Cinzia Finazzo; Rafal Piskorski; Sieglinde Ebner; Evert C Duin; Meike Goenrich; Rudolf K Thauer; Markus Reiher; Arthur Schweiger; Dariush Hinderberger; Bernhard Jaun
Journal:  J Am Chem Soc       Date:  2008-07-25       Impact factor: 15.419

10.  The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.

Authors:  Takeshi Hiromoto; Kenichi Ataka; Oliver Pilak; Sonja Vogt; Marco Salomone Stagni; Wolfram Meyer-Klaucke; Eberhard Warkentin; Rudolf K Thauer; Seigo Shima; Ulrich Ermler
Journal:  FEBS Lett       Date:  2009-01-20       Impact factor: 4.124

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  42 in total

1.  Hydride-containing models for the active site of the nickel-iron hydrogenases.

Authors:  Bryan E Barton; Thomas B Rauchfuss
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

Review 2.  Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

Authors:  Aaron M Appel; John E Bercaw; Andrew B Bocarsly; Holger Dobbek; Daniel L DuBois; Michel Dupuis; James G Ferry; Etsuko Fujita; Russ Hille; Paul J A Kenis; Cheryl A Kerfeld; Robert H Morris; Charles H F Peden; Archie R Portis; Stephen W Ragsdale; Thomas B Rauchfuss; Joost N H Reek; Lance C Seefeldt; Rudolf K Thauer; Grover L Waldrop
Journal:  Chem Rev       Date:  2013-06-14       Impact factor: 60.622

3.  Mapping metabolism onto the prebiotic organic chemistry of hydrothermal vents.

Authors:  Rogier Braakman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-01       Impact factor: 11.205

Review 4.  Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides.

Authors:  David Schilter; James M Camara; Mioy T Huynh; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  Chem Rev       Date:  2016-06-29       Impact factor: 60.622

5.  Biophysical and structural characterization of the putative nickel chaperone CooT from Carboxydothermus hydrogenoformans.

Authors:  M Alfano; J Pérard; R Miras; P Catty; C Cavazza
Journal:  J Biol Inorg Chem       Date:  2018-06-07       Impact factor: 3.358

6.  Under sulfur's spell.

Authors:  Thomas Rauchfuss
Journal:  Nat Chem       Date:  2011-07-22       Impact factor: 24.427

7.  Mechanism of proton transfer in [FeFe]-hydrogenase from Clostridium pasteurianum.

Authors:  Adam J Cornish; Katrin Gärtner; Hui Yang; John W Peters; Eric L Hegg
Journal:  J Biol Chem       Date:  2011-09-07       Impact factor: 5.157

8.  Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities.

Authors:  Konstantinos D Vogiatzis; Mikhail V Polynski; Justin K Kirkland; Jacob Townsend; Ali Hashemi; Chong Liu; Evgeny A Pidko
Journal:  Chem Rev       Date:  2018-10-30       Impact factor: 60.622

9.  Biochemical analysis of the interactions between the proteins involved in the [FeFe]-hydrogenase maturation process.

Authors:  Francesca Vallese; Paola Berto; Maria Ruzzene; Laura Cendron; Stefania Sarno; Edith De Rosa; Giorgio M Giacometti; Paola Costantini
Journal:  J Biol Chem       Date:  2012-08-29       Impact factor: 5.157

10.  Docking and migration of carbon monoxide in nitrogenase: the case for gated pockets from infrared spectroscopy and molecular dynamics.

Authors:  Leland B Gee; Igor Leontyev; Alexei Stuchebrukhov; Aubrey D Scott; Vladimir Pelmenschikov; Stephen P Cramer
Journal:  Biochemistry       Date:  2015-05-15       Impact factor: 3.162

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