Literature DB >> 20221540

The iron-site structure of [Fe]-hydrogenase and model systems: an X-ray absorption near edge spectroscopy study.

Marco Salomone-Stagni1, Francesco Stellato, C Matthew Whaley, Sonja Vogt, Silvia Morante, Seigo Shima, Thomas B Rauchfuss, Wolfram Meyer-Klaucke.   

Abstract

The [Fe]-hydrogenase is an ideal system for studying the electronic properties of the low spin iron site that is common to the catalytic centres of all hydrogenases. Because they have no auxiliary iron-sulfur clusters and possess a cofactor containing a single iron centre, the [Fe]-hydrogenases are well suited for spectroscopic analysis of those factors required for the activation of molecular hydrogen. Specifically, in this study we shed light on the electronic and molecular structure of the iron centre by XAS analysis of [Fe]-hydrogenase from Methanocaldococcus jannashii and five model complexes (Fe(ethanedithiolate)(CO)(2)(PMe(3))(2), [K(18-crown-6)](2)[Fe(CN)(2)(CO)(3)], K[Fe(CN)(CO)(4)], K(3)[Fe(III)(CN)(6)], K(4)[Fe(II)(CN)(6)]). The different electron donors have a strong influence on the iron absorption K-edge energy position, which is frequently used to determine the metal oxidation state. Our results demonstrate that the K-edges of Fe(II) complexes, achieved with low-spin ferrous thiolates, are consistent with a ferrous centre in the [Fe]-hydrogenase from Methanocaldococcus jannashii. The metal geometry also strongly influences the XANES and thus the electronic structure. Using in silico simulation, we were able to reproduce the main features of the XANES spectra and describe the effects of individual donor contributions on the spectra. Thereby, we reveal the essential role of an unusual carbon donor coming from an acyl group of the cofactor in the determination of the electronic structure required for the activity of the enzyme.

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Year:  2010        PMID: 20221540      PMCID: PMC3465567          DOI: 10.1039/b922557a

Source DB:  PubMed          Journal:  Dalton Trans        ISSN: 1477-9226            Impact factor:   4.390


  36 in total

Review 1.  Classification and phylogeny of hydrogenases.

Authors:  P M Vignais; B Billoud; J Meyer
Journal:  FEMS Microbiol Rev       Date:  2001-08       Impact factor: 16.408

2.  Biochemistry. A natural choice for activating hydrogen.

Authors:  Fraser A Armstrong; Juan C Fontecilla-Camps
Journal:  Science       Date:  2008-07-25       Impact factor: 47.728

3.  Sustainable metal catalysis with iron: from rust to a rising star?

Authors:  Stephan Enthaler; Kathrin Junge; Matthias Beller
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  The iron-sulfur cluster-free hydrogenase (Hmd) is a metalloenzyme with a novel iron binding motif.

Authors:  Malgorzata Korbas; Sonja Vogt; Wolfram Meyer-Klaucke; Eckhard Bill; Erica J Lyon; Rudolf K Thauer; Seigo Shima
Journal:  J Biol Chem       Date:  2006-08-03       Impact factor: 5.157

5.  Pendant bases as proton relays in iron hydride and dihydrogen complexes.

Authors:  Renee M Henry; Richard K Shoemaker; Daniel L DuBois; M Rakowski DuBois
Journal:  J Am Chem Soc       Date:  2006-03-08       Impact factor: 15.419

Review 6.  A third type of hydrogenase catalyzing H2 activation.

Authors:  Seigo Shima; Rudolf K Thauer
Journal:  Chem Rec       Date:  2007       Impact factor: 6.771

7.  H2-forming methylenetetrahydromethanopterin dehydrogenase, a novel type of hydrogenase without iron-sulfur clusters in methanogenic archaea.

Authors:  C Zirngibl; W Van Dongen; B Schwörer; R Von Bünau; M Richter; A Klein; R K Thauer
Journal:  Eur J Biochem       Date:  1992-09-01

8.  The crystal structure of the apoenzyme of the iron-sulphur cluster-free hydrogenase.

Authors:  Oliver Pilak; Björn Mamat; Sonja Vogt; Christoph H Hagemeier; Rudolf K Thauer; Seigo Shima; Clemens Vonrhein; Eberhard Warkentin; Ulrich Ermler
Journal:  J Mol Biol       Date:  2006-03-02       Impact factor: 5.469

9.  Coordination chemistry of [HFe(CN)(2)(CO)(3)](-) and its derivatives: toward a model for the iron subsite of the [NiFe]-hydrogenases.

Authors:  C Matthew Whaley; Thomas B Rauchfuss; Scott R Wilson
Journal:  Inorg Chem       Date:  2009-05-18       Impact factor: 5.165

10.  The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.

Authors:  Takeshi Hiromoto; Kenichi Ataka; Oliver Pilak; Sonja Vogt; Marco Salomone Stagni; Wolfram Meyer-Klaucke; Eberhard Warkentin; Rudolf K Thauer; Seigo Shima; Ulrich Ermler
Journal:  FEBS Lett       Date:  2009-01-20       Impact factor: 4.124

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  4 in total

1.  O2 reactions at the six-iron active site (H-cluster) in [FeFe]-hydrogenase.

Authors:  Camilla Lambertz; Nils Leidel; Kajsa G V Havelius; Jens Noth; Petko Chernev; Martin Winkler; Thomas Happe; Michael Haumann
Journal:  J Biol Chem       Date:  2011-09-19       Impact factor: 5.157

2.  EPR/ENDOR, Mössbauer, and quantum-chemical investigations of diiron complexes mimicking the active oxidized state of [FeFe]hydrogenase.

Authors:  Alexey Silakov; Matthew T Olsen; Stephen Sproules; Eduard J Reijerse; Thomas B Rauchfuss; Wolfgang Lubitz
Journal:  Inorg Chem       Date:  2012-07-16       Impact factor: 5.165

Review 3.  Radical S-adenosyl-L-methionine chemistry in the synthesis of hydrogenase and nitrogenase metal cofactors.

Authors:  Amanda S Byer; Eric M Shepard; John W Peters; Joan B Broderick
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

4.  Iron acyl thiolato carbonyls: structural models for the active site of the [Fe]-hydrogenase (Hmd).

Authors:  Aaron M Royer; Marco Salomone-Stagni; Thomas B Rauchfuss; Wolfram Meyer-Klaucke
Journal:  J Am Chem Soc       Date:  2010-11-09       Impact factor: 15.419

  4 in total

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