Literature DB >> 26587715

Reconstitution of [Fe]-hydrogenase using model complexes.

Seigo Shima1,2, Dafa Chen3, Tao Xu4, Matthew D Wodrich4,5, Takashi Fujishiro1, Katherine M Schultz4, Jörg Kahnt1, Kenichi Ataka6, Xile Hu4.   

Abstract

[Fe]-Hydrogenase catalyses the reversible hydrogenation of a methenyltetrahydromethanopterin substrate, which is an intermediate step during the methanogenesis from CO2 and H2. The active site contains an iron-guanylylpyridinol cofactor, in which Fe(2+) is coordinated by two CO ligands, as well as an acyl carbon atom and a pyridinyl nitrogen atom from a 3,4,5,6-substituted 2-pyridinol ligand. However, the mechanism of H2 activation by [Fe]-hydrogenase is unclear. Here we report the reconstitution of [Fe]-hydrogenase from an apoenzyme using two FeGP cofactor mimics to create semisynthetic enzymes. The small-molecule mimics reproduce the ligand environment of the active site, but are inactive towards H2 binding and activation on their own. We show that reconstituting the enzyme using a mimic that contains a 2-hydroxypyridine group restores activity, whereas an analogous enzyme with a 2-methoxypyridine complex was essentially inactive. These findings, together with density functional theory computations, support a mechanism in which the 2-hydroxy group is deprotonated before it serves as an internal base for heterolytic H2 cleavage.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26587715     DOI: 10.1038/nchem.2382

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  40 in total

Review 1.  Structural and functional analogues of the active sites of the [Fe]-, [NiFe]-, and [FeFe]-hydrogenases.

Authors:  Cédric Tard; Christopher J Pickett
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

2.  The third hydrogenase: a ferracyclic carbamoyl with close structural analogy to the active site of Hmd.

Authors:  Peter J Turrell; Joseph A Wright; Jamie N T Peck; Vasily S Oganesyan; Christopher J Pickett
Journal:  Angew Chem Int Ed Engl       Date:  2010-10-04       Impact factor: 15.336

3.  Hybrid [FeFe]-hydrogenases with modified active sites show remarkable residual enzymatic activity.

Authors:  Judith F Siebel; Agnieszka Adamska-Venkatesh; Katharina Weber; Sigrun Rumpel; Edward Reijerse; Wolfgang Lubitz
Journal:  Biochemistry       Date:  2015-02-11       Impact factor: 3.162

Review 4.  [Fe]-hydrogenase and models that contain iron-acyl ligation.

Authors:  Katherine M Schultz; Dafa Chen; Xile Hu
Journal:  Chem Asian J       Date:  2013-04-17

5.  The iron-sulfur cluster-free hydrogenase (Hmd) is a metalloenzyme with a novel iron binding motif.

Authors:  Malgorzata Korbas; Sonja Vogt; Wolfram Meyer-Klaucke; Eckhard Bill; Erica J Lyon; Rudolf K Thauer; Seigo Shima
Journal:  J Biol Chem       Date:  2006-08-03       Impact factor: 5.157

6.  Synthesis, structural characterization, and some properties of 2-acylmethyl-6-ester group-difunctionalized pyridine-containing iron complexes related to the active site of [Fe]-hydrogenase.

Authors:  Li-Cheng Song; Fu-Qiang Hu; Miao-Miao Wang; Zhao-Jun Xie; Kai-Kai Xu; Hai-Bin Song
Journal:  Dalton Trans       Date:  2014-04-10       Impact factor: 4.390

7.  Evidence for acyl-iron ligation in the active site of [Fe]-hydrogenase provided by mass spectrometry and infrared spectroscopy.

Authors:  Seigo Shima; Michael Schick; Jörg Kahnt; Kenichi Ataka; Klaus Steinbach; Uwe Linne
Journal:  Dalton Trans       Date:  2011-11-14       Impact factor: 4.390

8.  H2-forming methylenetetrahydromethanopterin dehydrogenase, a novel type of hydrogenase without iron-sulfur clusters in methanogenic archaea.

Authors:  C Zirngibl; W Van Dongen; B Schwörer; R Von Bünau; M Richter; A Klein; R K Thauer
Journal:  Eur J Biochem       Date:  1992-09-01

9.  A functional [NiFe]hydrogenase mimic that catalyzes electron and hydride transfer from H2.

Authors:  Seiji Ogo; Koji Ichikawa; Takahiro Kishima; Takahiro Matsumoto; Hidetaka Nakai; Katsuhiro Kusaka; Takashi Ohhara
Journal:  Science       Date:  2013-02-08       Impact factor: 47.728

10.  The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.

Authors:  Takeshi Hiromoto; Kenichi Ataka; Oliver Pilak; Sonja Vogt; Marco Salomone Stagni; Wolfram Meyer-Klaucke; Eberhard Warkentin; Rudolf K Thauer; Seigo Shima; Ulrich Ermler
Journal:  FEBS Lett       Date:  2009-01-20       Impact factor: 4.124

View more
  5 in total

Review 1.  Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides.

Authors:  David Schilter; James M Camara; Mioy T Huynh; Sharon Hammes-Schiffer; Thomas B Rauchfuss
Journal:  Chem Rev       Date:  2016-06-29       Impact factor: 60.622

2.  Tracing the 'ninth sulfur' of the nitrogenase cofactor via a semi-synthetic approach.

Authors:  Kazuki Tanifuji; Chi Chung Lee; Nathaniel S Sickerman; Kazuyuki Tatsumi; Yasuhiro Ohki; Yilin Hu; Markus W Ribbe
Journal:  Nat Chem       Date:  2018-04-16       Impact factor: 24.427

3.  Optimization of Culture Conditions for Oxygen-Tolerant Regulatory [NiFe]-Hydrogenase Production from Ralstonia eutropha H16 in Escherichia coli.

Authors:  Qin Fan; Giorgio Caserta; Christian Lorent; Oliver Lenz; Peter Neubauer; Matthias Gimpel
Journal:  Microorganisms       Date:  2021-05-31

4.  A catalytically active [Mn]-hydrogenase incorporating a non-native metal cofactor.

Authors:  Hui-Jie Pan; Gangfeng Huang; Matthew D Wodrich; Farzaneh Fadaei Tirani; Kenichi Ataka; Seigo Shima; Xile Hu
Journal:  Nat Chem       Date:  2019-05-20       Impact factor: 24.427

Review 5.  From protein engineering to artificial enzymes - biological and biomimetic approaches towards sustainable hydrogen production.

Authors:  C Esmieu; P Raleiras; G Berggren
Journal:  Sustain Energy Fuels       Date:  2018-02-06       Impact factor: 6.367

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.