Literature DB >> 19159974

Identification of cellulase genes from the metagenomes of compost soils and functional characterization of one novel endoglucanase.

Hao Pang1, Peng Zhang, Cheng-Jie Duan, Xin-Chun Mo, Ji-Liang Tang, Jia-Xun Feng.   

Abstract

Metagenomics, a new research field developed over the past decade, aims to identify potential enzymes from nonculturable microbes. In this study, genes encoding three glycoside hydrolase family (GHF) 9 endoglucanases and one GHF 5 endoglucanase were cloned and identified from the metagenome of the compost soils. The shared identities between the predicted amino acid sequences of these genes and their closest homologues in the database were less than 70%. One GHF 9 endoglucanase, Umcel9B, was further characterized. The recombinant protein, Umcel9B, showed activity against carboxymethyl cellulose, indicating that Umcel9B is an endoactive enzyme. Enzymatic activity occurs optimally at a pH of 7.0 and a temperature of 25 degrees C.

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Year:  2009        PMID: 19159974     DOI: 10.1007/s00284-008-9346-y

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  19 in total

1.  Prospecting for novel biocatalysts in a soil metagenome.

Authors:  S Voget; C Leggewie; A Uesbeck; C Raasch; K-E Jaeger; W R Streit
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

Review 2.  The soil metagenome--a rich resource for the discovery of novel natural products.

Authors:  Rolf Daniel
Journal:  Curr Opin Biotechnol       Date:  2004-06       Impact factor: 9.740

3.  Specific characteristics of family 45 endoglucanases from Mucorales in the use of textiles and laundry.

Authors:  Atsushi Shimonaka; Jinichiro Koga; Yuko Baba; Tomoko Nishimura; Koichiro Murashima; Hidetoshi Kubota; Toshiaki Kono
Journal:  Biosci Biotechnol Biochem       Date:  2006-04       Impact factor: 2.043

4.  Characterization of a metagenome-derived halotolerant cellulase.

Authors:  S Voget; H L Steele; W R Streit
Journal:  J Biotechnol       Date:  2006-04-03       Impact factor: 3.307

Review 5.  Mining enzymes from extreme environments.

Authors:  Manuel Ferrer; Olga Golyshina; Ana Beloqui; Peter N Golyshin
Journal:  Curr Opin Microbiol       Date:  2007-06-04       Impact factor: 7.934

Review 6.  What's in the mix: phylogenetic classification of metagenome sequence samples.

Authors:  Alice C McHardy; Isidore Rigoutsos
Journal:  Curr Opin Microbiol       Date:  2007-10-22       Impact factor: 7.934

7.  Cloning and identification of novel cellulase genes from uncultured microorganisms in rabbit cecum and characterization of the expressed cellulases.

Authors:  Yi Feng; Cheng-Jie Duan; Hao Pang; Xin-Chun Mo; Chun-Feng Wu; Yuan Yu; Ya-Lin Hu; Jie Wei; Ji-Liang Tang; Jia-Xun Feng
Journal:  Appl Microbiol Biotechnol       Date:  2007-01-11       Impact factor: 4.813

8.  Characterization and gene cloning of a cold-active cellulase from a deep-sea psychrotrophic bacterium Pseudoalteromonas sp. DY3.

Authors:  Runying Zeng; Pengjun Xiong; Jianjun Wen
Journal:  Extremophiles       Date:  2005-08-24       Impact factor: 2.395

9.  Properties of cellulosomal family 9 cellulases from Clostridium cellulovorans.

Authors:  Takamitsu Arai; Akihiko Kosugi; Helen Chan; Roger Koukiekolo; Hideaki Yukawa; Masayuki Inui; Roy H Doi
Journal:  Appl Microbiol Biotechnol       Date:  2006-03-11       Impact factor: 4.813

10.  Characterization of a gene encoding cellulase from uncultured soil bacteria.

Authors:  Soo-Jin Kim; Chang-Muk Lee; Bo-Ram Han; Min-Young Kim; Yun-Soo Yeo; Sang-Hong Yoon; Bon-Sung Koo; Hong-Ki Jun
Journal:  FEMS Microbiol Lett       Date:  2008-03-18       Impact factor: 2.742

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  24 in total

1.  Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes.

Authors:  Lena Tasse; Juliette Bercovici; Sandra Pizzut-Serin; Patrick Robe; Julien Tap; Christophe Klopp; Brandi L Cantarel; Pedro M Coutinho; Bernard Henrissat; Marion Leclerc; Joël Doré; Pierre Monsan; Magali Remaud-Simeon; Gabrielle Potocki-Veronese
Journal:  Genome Res       Date:  2010-09-14       Impact factor: 9.043

2.  Molecular cloning, purification, and characterization of a novel, acidic, pH-stable endoglucanase from Martelella mediterranea.

Authors:  Junli Dong; Yuzhi Hong; Zongze Shao; Ziduo Liu
Journal:  J Microbiol       Date:  2010-06-23       Impact factor: 3.422

3.  Identification and characterization of a halotolerant, cold-active marine endo-β-1,4-glucanase by using functional metagenomics of seaweed-associated microbiota.

Authors:  Marjolaine Martin; Sophie Biver; Sébastien Steels; Tristan Barbeyron; Murielle Jam; Daniel Portetelle; Gurvan Michel; Micheline Vandenbol
Journal:  Appl Environ Microbiol       Date:  2014-06-06       Impact factor: 4.792

4.  C/N ratio drives soil actinobacterial cellobiohydrolase gene diversity.

Authors:  Alexandre B de Menezes; Miranda T Prendergast-Miller; Pabhon Poonpatana; Mark Farrell; Andrew Bissett; Lynne M Macdonald; Peter Toscas; Alan E Richardson; Peter H Thrall
Journal:  Appl Environ Microbiol       Date:  2015-02-20       Impact factor: 4.792

Review 5.  Transposases are the most abundant, most ubiquitous genes in nature.

Authors:  Ramy K Aziz; Mya Breitbart; Robert A Edwards
Journal:  Nucleic Acids Res       Date:  2010-03-09       Impact factor: 16.971

6.  Isolation of cold-active, acidic endocellulase from Ladakh soil by functional metagenomics.

Authors:  Archana Bhat; Syed Riyaz-Ul-Hassan; Nasier Ahmad; Nidhi Srivastava; Sarojini Johri
Journal:  Extremophiles       Date:  2013-01-26       Impact factor: 2.395

7.  Newly derived GH43 gene from compost metagenome showing dual xylanase and cellulase activities.

Authors:  Ritthironk Sae-Lee; Atcha Boonmee
Journal:  Folia Microbiol (Praha)       Date:  2014-04-16       Impact factor: 2.099

Review 8.  Biocatalysts and small molecule products from metagenomic studies.

Authors:  Hala A Iqbal; Zhiyang Feng; Sean F Brady
Journal:  Curr Opin Chem Biol       Date:  2012-03-26       Impact factor: 8.822

9.  Identification and characterization of novel cellulolytic and hemicellulolytic genes and enzymes derived from German grassland soil metagenomes.

Authors:  Heiko Nacke; Martin Engelhaupt; Silja Brady; Christiane Fischer; Janine Tautzt; Rolf Daniel
Journal:  Biotechnol Lett       Date:  2011-12-21       Impact factor: 2.461

10.  Cloning and identification of novel hydrolase genes from a dairy cow rumen metagenomic library and characterization of a cellulase gene.

Authors:  Xia Gong; Robert J Gruninger; Meng Qi; Lyn Paterson; Robert J Forster; Ron M Teather; Tim A McAllister
Journal:  BMC Res Notes       Date:  2012-10-13
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