Literature DB >> 15193327

The soil metagenome--a rich resource for the discovery of novel natural products.

Rolf Daniel1.   

Abstract

Soil microorganisms have been the most valuable source of natural products, providing industrially important antibiotics and biocatalysts. But, of late, the discovery rate of novel biomolecules using traditional cultivation techniques has been extremely low, as most soil microorganisms cannot be cultured in this way. The development of novel cultivation-dependent and molecular cultivation-independent approaches has paved the way for a new era of product recovery from soil microorganisms. In particular, gene-mining based on the construction and screening of complex libraries derived from the soil metagenome provides opportunities to fully explore and exploit the enormous genetic and metabolic diversity of soil microorganisms. This strategy has already resulted in the isolation of novel biocatalysts and bioactive molecules.

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Year:  2004        PMID: 15193327     DOI: 10.1016/j.copbio.2004.04.005

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  49 in total

1.  Identification and characterization of a novel cold-adapted esterase from a metagenomic library of mountain soil.

Authors:  Kyong-Cheol Ko; Soon-Ok Rim; Yunjon Han; Bong Seok Shin; Geun-Joong Kim; Jong Hyun Choi; Jae Jun Song
Journal:  J Ind Microbiol Biotechnol       Date:  2012-01-24       Impact factor: 3.346

2.  Do we need new antibiotics? The search for new targets and new compounds.

Authors:  Jaroslav Spížek; Jitka Novotná; Tomáš Rezanka; Arnold L Demain
Journal:  J Ind Microbiol Biotechnol       Date:  2010-11-18       Impact factor: 3.346

3.  Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor.

Authors:  Lynn L Williamson; Bradley R Borlee; Patrick D Schloss; Changhui Guan; Heather K Allen; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

Review 4.  Sponge-associated microorganisms: evolution, ecology, and biotechnological potential.

Authors:  Michael W Taylor; Regina Radax; Doris Steger; Michael Wagner
Journal:  Microbiol Mol Biol Rev       Date:  2007-06       Impact factor: 11.056

5.  Identification of cellulase genes from the metagenomes of compost soils and functional characterization of one novel endoglucanase.

Authors:  Hao Pang; Peng Zhang; Cheng-Jie Duan; Xin-Chun Mo; Ji-Liang Tang; Jia-Xun Feng
Journal:  Curr Microbiol       Date:  2009-01-22       Impact factor: 2.188

6.  Novel cold-adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases.

Authors:  Eun-Young Kim; Ki-Hoon Oh; Mi-Hwa Lee; Chul-Hyung Kang; Tae-Kwang Oh; Jung-Hoon Yoon
Journal:  Appl Environ Microbiol       Date:  2008-10-17       Impact factor: 4.792

7.  Hidden biosynthetic treasures brought to light.

Authors:  Christian Hertweck
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

Review 8.  Novel classes of antibiotics or more of the same?

Authors:  Anthony R M Coates; Gerry Halls; Yanmin Hu
Journal:  Br J Pharmacol       Date:  2011-05       Impact factor: 8.739

9.  An improved method for extracting bacteria from soil for high molecular weight DNA recovery and BAC library construction.

Authors:  Juan Liu; Jingquan Li; Li Feng; Hui Cao; Zhongli Cui
Journal:  J Microbiol       Date:  2011-01-09       Impact factor: 3.422

Review 10.  Development of novel drugs from marine surface associated microorganisms.

Authors:  Anahit Penesyan; Staffan Kjelleberg; Suhelen Egan
Journal:  Mar Drugs       Date:  2010-03-01       Impact factor: 5.118

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