Literature DB >> 22455793

Biocatalysts and small molecule products from metagenomic studies.

Hala A Iqbal1, Zhiyang Feng, Sean F Brady.   

Abstract

The vast majority of bacteria present in environmental samples have never been cultured and therefore have not been exploited for the ability to produce useful biocatalysts or collections of biocatalysts generating interesting small molecules. Metagenomic libraries constructed using DNA extracted directly from natural bacterial communities offer access to the genetic information present in the genomes of these as yet uncultured bacteria. This review highlights recent efforts to recover both discrete enzymes and small molecules from metagenomic libraries.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22455793      PMCID: PMC3335775          DOI: 10.1016/j.cbpa.2012.02.015

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  50 in total

1.  Identification and phylogenetic characterization of a new subfamily of α-amylase enzymes from marine microorganisms.

Authors:  Yang Liu; Yin Lei; Xuecheng Zhang; Yi Gao; Yazhong Xiao; Hui Peng
Journal:  Mar Biotechnol (NY)       Date:  2011-11-11       Impact factor: 3.619

2.  Novel polymerase chain reaction primers for the specific detection of bacterial copper P-type ATPases gene sequences in environmental isolates and metagenomic DNA.

Authors:  R De la Iglesia; D Valenzuela-Heredia; J P Pavissich; S Freyhoffer; S Andrade; J A Correa; B González
Journal:  Lett Appl Microbiol       Date:  2010-03-17       Impact factor: 2.858

3.  Prospecting metagenomic enzyme subfamily genes for DNA family shuffling by a novel PCR-based approach.

Authors:  Qiuyan Wang; Huili Wu; Anming Wang; Pengfei Du; Xiaolin Pei; Haifeng Li; Xiaopu Yin; Lifeng Huang; Xiaolong Xiong
Journal:  J Biol Chem       Date:  2010-10-20       Impact factor: 5.157

4.  Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes.

Authors:  Taku Uchiyama; Takashi Abe; Toshimichi Ikemura; Kazuya Watanabe
Journal:  Nat Biotechnol       Date:  2004-12-19       Impact factor: 54.908

Review 5.  Natural products as sources of new drugs over the last 25 years.

Authors:  David J Newman; Gordon M Cragg
Journal:  J Nat Prod       Date:  2007-02-20       Impact factor: 4.050

6.  Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella.

Authors:  Eric W Schmidt; James T Nelson; David A Rasko; Sebastian Sudek; Jonathan A Eisen; Margo G Haygood; Jacques Ravel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-09       Impact factor: 11.205

7.  Gram negative shuttle BAC vector for heterologous expression of metagenomic libraries.

Authors:  Kavita S Kakirde; Jadwiga Wild; Ronald Godiska; David A Mead; Andrew G Wiggins; Robert M Goodman; Waclaw Szybalski; Mark R Liles
Journal:  Gene       Date:  2010-11-26       Impact factor: 3.688

Review 8.  Cyanobactins-ribosomal cyclic peptides produced by cyanobacteria.

Authors:  Kaarina Sivonen; Niina Leikoski; David P Fewer; Jouni Jokela
Journal:  Appl Microbiol Biotechnol       Date:  2010-02-27       Impact factor: 4.813

9.  A global assembly line for cyanobactins.

Authors:  Mohamed S Donia; Jacques Ravel; Eric W Schmidt
Journal:  Nat Chem Biol       Date:  2008-04-20       Impact factor: 15.040

10.  Enzymes for the laundry industries: tapping the vast metagenomic pool of alkaline proteases.

Authors:  F Niehaus; E Gabor; S Wieland; P Siegert; K H Maurer; J Eck
Journal:  Microb Biotechnol       Date:  2011-09-06       Impact factor: 5.813

View more
  27 in total

Review 1.  Culture-independent discovery of natural products from soil metagenomes.

Authors:  Micah Katz; Bradley M Hover; Sean F Brady
Journal:  J Ind Microbiol Biotechnol       Date:  2015-11-19       Impact factor: 3.346

2.  Structural and biochemical characterization of a metagenome-derived esterase with a long N-terminal extension.

Authors:  Hiroyuki Okano; Xun Hong; Eiko Kanaya; Clement Angkawidjaja; Shigenori Kanaya
Journal:  Protein Sci       Date:  2014-12-05       Impact factor: 6.725

3.  Functional screening of metagenome and genome libraries for detection of novel flavonoid-modifying enzymes.

Authors:  U Rabausch; J Juergensen; N Ilmberger; S Böhnke; S Fischer; B Schubach; M Schulte; W R Streit
Journal:  Appl Environ Microbiol       Date:  2013-05-17       Impact factor: 4.792

4.  Identification of the Colicin V Bacteriocin Gene Cluster by Functional Screening of a Human Microbiome Metagenomic Library.

Authors:  Louis J Cohen; Sun Han; Yun-Han Huang; Sean F Brady
Journal:  ACS Infect Dis       Date:  2017-08-21       Impact factor: 5.084

5.  A high-throughput screen for antibiotic drug discovery.

Authors:  Thomas C Scanlon; Sarah M Dostal; Karl E Griswold
Journal:  Biotechnol Bioeng       Date:  2013-08-29       Impact factor: 4.530

6.  Natural Product Discovery through Improved Functional Metagenomics in Streptomyces.

Authors:  Hala A Iqbal; Lila Low-Beinart; Joseph U Obiajulu; Sean F Brady
Journal:  J Am Chem Soc       Date:  2016-07-22       Impact factor: 15.419

Review 7.  Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?

Authors:  Brian O Bachmann; Steven G Van Lanen; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2013-12-17       Impact factor: 3.346

8.  Quorum sensing is a language of chemical signals and plays an ecological role in algal-bacterial interactions.

Authors:  Jin Zhou; Yihua Lyu; Mindy Richlen; Donald M Anderson; Zhonghua Cai
Journal:  CRC Crit Rev Plant Sci       Date:  2016-05-04       Impact factor: 5.188

9.  A Novel VIII Carboxylesterase with High Hydrolytic Activity Against Ampicillin from a Soil Metagenomic Library.

Authors:  Fang Nan; Junwei Jiang; Shenglu Wu; Yueqi Zhang; Jiarong Qiu; Beibei Qiao; Shan Li; Zhihong Xin
Journal:  Mol Biotechnol       Date:  2019-12       Impact factor: 2.695

10.  Bacterial natural product biosynthetic domain composition in soil correlates with changes in latitude on a continent-wide scale.

Authors:  Christophe Lemetre; Jeffrey Maniko; Zachary Charlop-Powers; Ben Sparrow; Andrew J Lowe; Sean F Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-18       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.