Literature DB >> 19137368

Developing a tissue resource to characterize the genome of pancreatic cancer.

Georgios Voidonikolas1, Marie-Claude Gingras, Sally Hodges, Amy L McGuire, Changyi Chen, Richard A Gibbs, F Charles Brunicardi, William E Fisher.   

Abstract

With recent advances in DNA sequencing technology, medicine is entering an era in which a personalized genomic approach to diagnosis and treatment of disease is feasible. However, discovering the role of altered DNA sequences in various disease states will be a challenging task. The genomic approach offers great promise for diseases, such as pancreatic cancer, in which the effect of current diagnostic and treatment modalities is disappointing. To facilitate the characterization of the genome of pancreatic cancer, high-quality and well-annotated tissue repositories are needed. This article summarizes the basic principles that guide the creation of such a repository, including sample processing and preservation techniques, sample size and composition, and collection of clinical data elements.

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Year:  2009        PMID: 19137368      PMCID: PMC2925468          DOI: 10.1007/s00268-008-9877-1

Source DB:  PubMed          Journal:  World J Surg        ISSN: 0364-2313            Impact factor:   3.352


  44 in total

1.  Effects of ischemia on gene expression.

Authors:  J Huang; R Qi; J Quackenbush; E Dauway; E Lazaridis; T Yeatman
Journal:  J Surg Res       Date:  2001-08       Impact factor: 2.192

Review 2.  Research ethics and the challenge of whole-genome sequencing.

Authors:  Amy L McGuire; Timothy Caulfield; Mildred K Cho
Journal:  Nat Rev Genet       Date:  2008-02       Impact factor: 53.242

3.  Biorepository standards and protocols for collecting, processing, and storing human tissues.

Authors:  Dean Troyer
Journal:  Methods Mol Biol       Date:  2008

4.  The complete genome of an individual by massively parallel DNA sequencing.

Authors:  David A Wheeler; Maithreyan Srinivasan; Michael Egholm; Yufeng Shen; Lei Chen; Amy McGuire; Wen He; Yi-Ju Chen; Vinod Makhijani; G Thomas Roth; Xavier Gomes; Karrie Tartaro; Faheem Niazi; Cynthia L Turcotte; Gerard P Irzyk; James R Lupski; Craig Chinault; Xing-zhi Song; Yue Liu; Ye Yuan; Lynne Nazareth; Xiang Qin; Donna M Muzny; Marcel Margulies; George M Weinstock; Richard A Gibbs; Jonathan M Rothberg
Journal:  Nature       Date:  2008-04-17       Impact factor: 49.962

5.  Preservation of RNA for functional genomic studies: a multidisciplinary tumor bank protocol.

Authors:  S R Florell; C M Coffin; J A Holden; J W Zimmermann; J W Gerwels; B K Summers; D A Jones; S A Leachman
Journal:  Mod Pathol       Date:  2001-02       Impact factor: 7.842

Review 6.  Avoiding biohazards in medical, veterinary and research laboratories.

Authors:  W E Grizzle; J Fredenburgh
Journal:  Biotech Histochem       Date:  2001-07       Impact factor: 1.718

7.  A research-based tumor tissue bank of gynecologic oncology: characteristics of nucleic acids extracted from normal and tumor tissues from different sites.

Authors:  T-Y Chu; K-S Hwang; M-H Yu; H-S Lee; H-C Lai; J-Y Liu
Journal:  Int J Gynecol Cancer       Date:  2002 Mar-Apr       Impact factor: 3.437

8.  Utilization of human tissue in breast cancer research.

Authors:  W Prime; M E Sobel; C S Herrington
Journal:  Breast Cancer Res       Date:  2000-04-13       Impact factor: 6.466

9.  RNA extraction from ten year old formalin-fixed paraffin-embedded breast cancer samples: a comparison of column purification and magnetic bead-based technologies.

Authors:  Alfredo Ribeiro-Silva; Haiyu Zhang; Stefanie S Jeffrey
Journal:  BMC Mol Biol       Date:  2007-12-21       Impact factor: 2.946

10.  The development and deployment of Common Data Elements for tissue banks for translational research in cancer - an emerging standard based approach for the Mesothelioma Virtual Tissue Bank.

Authors:  Sambit K Mohanty; Amita T Mistry; Waqas Amin; Anil V Parwani; Andrew K Pople; Linda Schmandt; Sharon B Winters; Erin Milliken; Paula Kim; Nancy B Whelan; Ghada Farhat; Jonathan Melamed; Emanuela Taioli; Rajiv Dhir; Harvey I Pass; Michael J Becich
Journal:  BMC Cancer       Date:  2008-04-08       Impact factor: 4.430

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  7 in total

1.  Linkage of data from diverse data sources (LDS): a data combination model provides clinical data of corresponding specimens in biobanking information system.

Authors:  Okyaz Eminaga; Enver Özgür; Axel Semjonow; Jan Herden; Ilgar Akbarov; Ali Tok; Udo Engelmann; Sebastian Wille
Journal:  J Med Syst       Date:  2013-09-11       Impact factor: 4.460

2.  A primer on a hepatocellular carcinoma bioresource bank using the cancer genome atlas guidelines: practical issues and pitfalls.

Authors:  N Thao T Nguyen; Ron T Cotton; Theresa R Harring; Jacfranz J Guiteau; Marie-Claude Gingras; David A Wheeler; Christine A O'Mahony; Richard A Gibbs; F Charles Brunicardi; John A Goss
Journal:  World J Surg       Date:  2011-08       Impact factor: 3.352

Review 3.  Overview of the development of personalized genomic medicine and surgery.

Authors:  F Charles Brunicardi; Richard A Gibbs; David A Wheeler; John Nemunaitis; William Fisher; John Goss; Changyi Chen
Journal:  World J Surg       Date:  2011-08       Impact factor: 3.352

4.  Standard Operating Procedures for Biospecimen Collection, Processing, and Storage: From the Consortium for the Study of Chronic Pancreatitis, Diabetes, and Pancreatic Cancer.

Authors:  William E Fisher; Zobeida Cruz-Monserrate; Amy L McElhany; Gregory B Lesinski; Phil A Hart; Ria Ghosh; George Van Buren; Douglas S Fishman; Jo Ann S Rinaudo; Jose Serrano; Sudhir Srivastava; Thomas Mace; Mark Topazian; Ziding Feng; Dhiraj Yadav; Stephen J Pandol; Steven J Hughes; Robert Y Liu; Emily Lu; Robert Orr; David C Whitcomb; Amer S Abouhamze; Hanno Steen; Zachary M Sellers; David M Troendle; Aliye Uc; Mark E Lowe; Darwin L Conwell
Journal:  Pancreas       Date:  2018 Nov/Dec       Impact factor: 3.327

5.  Single nucleotide polymorphism in RECQL and survival in resectable pancreatic adenocarcinoma.

Authors:  Ronald T Cotton; Donghui Li; Steven E Scherer; Donna M Muzny; Sally E Hodges; Robbi L Catania; Agnieszka K Witkiewicz; Jonathan R Brody; Eugene P Kennedy; Charles J Yeo; F Charles Brunicardi; Richard A Gibbs; Marie-Claude Gingras; William E Fisher
Journal:  HPB (Oxford)       Date:  2009-08       Impact factor: 3.647

6.  Development of an Integrated Biospecimen Database among the Regional Biobanks in Korea.

Authors:  Hyun Sang Park; Hune Cho; Hwa Sun Kim
Journal:  Healthc Inform Res       Date:  2016-04-30

Review 7.  Defining best practices for tissue procurement in immuno-oncology clinical trials: consensus statement from the Society for Immunotherapy of Cancer Surgery Committee.

Authors:  Brian Gastman; Piyush K Agarwal; Adam Berger; Genevieve Boland; Stephen Broderick; Lisa H Butterfield; David Byrd; Peter E Fecci; Robert L Ferris; Yuman Fong; Stephanie L Goff; Matthew M Grabowski; Fumito Ito; Michael Lim; Michael T Lotze; Haider Mahdi; Mokenge Malafa; Carol D Morris; Pranav Murthy; Rogerio I Neves; Adekunle Odunsi; Sara I Pai; Sangeetha Prabhakaran; Steven A Rosenberg; Ragheed Saoud; Jyothi Sethuraman; Joseph Skitzki; Craig L Slingluff; Vernon K Sondak; John B Sunwoo; Simon Turcotte; Cecilia Cs Yeung; Howard L Kaufman
Journal:  J Immunother Cancer       Date:  2020-11       Impact factor: 12.469

  7 in total

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