Literature DB >> 18370320

Biorepository standards and protocols for collecting, processing, and storing human tissues.

Dean Troyer1.   

Abstract

Recent advances in high-throughput assays for gene expression (genomics), proteins (proteomics), and metabolites (metabolomics) have engendered a parallel need for well-annotated human biological samples. Samples from both diseased and unaffected normal tissues are often required. Biorepositories consist of a specimen bank linked to a database of information. Assuring chain of custody and annotation of samples with relevant clinical information is required. The value of samples to end users is generally commensurate with the quality and extent of relevant clinical data included with the samples. Procurement of tissues is often done with parallel pre- and/or post-treatment venipuncture to obtain blood and tissue samples from the same subject. Biorepositories must also process, preserve, and distribute samples to end users. Like traditional libraries, biorepositories are meant to be used, and they are most useful when the needs of end users (researchers) are considered in the planning and development process. Ethics review and an awareness of regulatory requirements for storage, transport, and distribution are required. In the USA, Institutional Review Boards are the local regulatory entities that review protocols for banking of human biological tissues. Governmental and professional agencies and organizations provide some guidelines for standard operating procedures. The Food and Drug Administration (FDA), the Centers For Disease Control (CDC), and professional organizations such as the American Association of Tissue Banks (AATB), the American Association of Blood Banks, The International Red Cross, International Society for Biological Repositories (ISBER) and other organizations provide guidelines for biorepositories and banking of human tissues (see Table 1). To date, these guidelines are directed largely toward procurement, banking, and distribution of human tissues for therapeutic uses. In the international setting, the World Health Organization provides ethical guidelines for procurement and operating procedures. The most commonly available tissues are formalin-fixed paraffin-embedded tissues (FFPET). While FFPET can be used for immunohistochemistry, certain DNA-based assays, and even RNA, frozen tissues are best suited for isolation and characterization of proteins and RNA. Freezers, back-up systems, monitors, and alarm systems and appropriate physical security are needed for long-term storage of frozen tissues. Other storage formats such as blotting onto filter paper for storage at room temperature are more commonly used for blood and can provide important "fingerprinting" for chain of custody, linking a given subject to a tissue sample.

Entities:  

Mesh:

Year:  2008        PMID: 18370320     DOI: 10.1007/978-1-60327-047-2_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

1.  Linkage of data from diverse data sources (LDS): a data combination model provides clinical data of corresponding specimens in biobanking information system.

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Journal:  J Med Syst       Date:  2013-09-11       Impact factor: 4.460

2.  A biorepository for ophthalmic surgical specimens.

Authors:  Jessica M Skeie; Stephen H Tsang; Ryan Vande Zande; Macy M Fickbohm; Shaival S Shah; John G Vallone; Vinit B Mahajan
Journal:  Proteomics Clin Appl       Date:  2013-11-22       Impact factor: 3.494

Review 3.  Biobanking for necrotizing enterocolitis: Needs and standards.

Authors:  Hala Chaaban; Troy A Markel; Jennifer Canvasser; Misty Good
Journal:  J Pediatr Surg       Date:  2019-05-11       Impact factor: 2.545

4.  Significance of biological resource collection and tumor tissue bank creation.

Authors:  Ying-Yan Yu; Zheng-Gang Zhu
Journal:  World J Gastrointest Oncol       Date:  2010-01-15

Review 5.  Beyond the paradigm: Combining mass spectrometry and nuclear magnetic resonance for metabolomics.

Authors:  Darrell D Marshall; Robert Powers
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-01-11       Impact factor: 9.795

6.  Cryopreservation and in vitro culture of primary cell types from lung tissue of a stranded pygmy sperm whale (Kogia breviceps).

Authors:  Demetri D Spyropoulos; Wayne E McFee; Danforth A Newton; John E Baatz
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2011-04-09       Impact factor: 3.228

7.  Proteomic analysis of vitreous biopsy techniques.

Authors:  Jessica M Skeie; Eric N Brown; Harryl D Martinez; Stephen R Russell; Emily S Birkholz; James C Folk; H Culver Boldt; Karen M Gehrs; Edwin M Stone; Michael E Wright; Vinit B Mahajan
Journal:  Retina       Date:  2012 Nov-Dec       Impact factor: 4.256

8.  Developing a tissue resource to characterize the genome of pancreatic cancer.

Authors:  Georgios Voidonikolas; Marie-Claude Gingras; Sally Hodges; Amy L McGuire; Changyi Chen; Richard A Gibbs; F Charles Brunicardi; William E Fisher
Journal:  World J Surg       Date:  2009-04       Impact factor: 3.352

9.  Schizophrenia genomics and proteomics: are we any closer to biomarker discovery?

Authors:  Shaheen E Lakhan; Alon Kramer
Journal:  Behav Brain Funct       Date:  2009-01-07       Impact factor: 3.759

10.  Evolutionary concepts in biobanking - the BC BioLibrary.

Authors:  Peter H Watson; Janet E Wilson-McManus; Rebecca O Barnes; Sara C Giesz; Adrian Png; Richard G Hegele; Jacquelyn N Brinkman; Ian R Mackenzie; David G Huntsman; Anne Junker; Blake Gilks; Erik Skarsgard; Michael Burgess; Samuel Aparicio; Bruce M McManus
Journal:  J Transl Med       Date:  2009-11-12       Impact factor: 5.531

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