Literature DB >> 30325860

Standard Operating Procedures for Biospecimen Collection, Processing, and Storage: From the Consortium for the Study of Chronic Pancreatitis, Diabetes, and Pancreatic Cancer.

William E Fisher, Zobeida Cruz-Monserrate1, Amy L McElhany, Gregory B Lesinski2, Phil A Hart1, Ria Ghosh3, George Van Buren, Douglas S Fishman4, Jo Ann S Rinaudo5, Jose Serrano6, Sudhir Srivastava5, Thomas Mace1, Mark Topazian7, Ziding Feng3, Dhiraj Yadav8, Stephen J Pandol9, Steven J Hughes10, Robert Y Liu11, Emily Lu11, Robert Orr12, David C Whitcomb7, Amer S Abouhamze13, Hanno Steen14, Zachary M Sellers15, David M Troendle16, Aliye Uc17, Mark E Lowe18, Darwin L Conwell1.   

Abstract

High-quality and well-annotated biorepositories are needed to better understand the pathophysiology and biologic mechanisms of chronic pancreatitis (CP) and its consequences. We report a methodology for the development of a robust standard operating procedure (SOP) for a biorepository based on the experience of the clinical centers within the consortium to study Chronic Pancreatitis, Diabetes and Pancreas Cancer Clinical Centers (CPDPC), supported by the National Cancer Institute and the National Institute for Diabetes and Digestive and Kidney Diseases as a unique multidisciplinary model to study CP, diabetes, and pancreatic cancer in both children and adults. Standard operating procedures from the CPDPC centers were evaluated and consolidated. The literature was reviewed for standard biorepository operating procedures that facilitated downstream molecular analysis. The existing literature on biobanking practices was harmonized with the SOPs from the clinical centers to produce a biorepository for pancreatic research. This article reports the methods and basic principles behind the creation of SOPs to develop a biorepository for the CPDPC. These will serve as a guide for investigators developing biorepositories in pancreas research. Rigorous and meticulous adherence to standardized biospecimen collection will facilitate investigations to better understand the pathophysiology and biologic mechanisms of CP, diabetes, and pancreatic cancer.

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Year:  2018        PMID: 30325860      PMCID: PMC6197069          DOI: 10.1097/MPA.0000000000001171

Source DB:  PubMed          Journal:  Pancreas        ISSN: 0885-3177            Impact factor:   3.327


  34 in total

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5.  Biospecimen reporting for improved study quality (BRISQ).

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Review 7.  Isolation and preservation of peripheral blood mononuclear cells for analysis of islet antigen-reactive T cell responses: position statement of the T-Cell Workshop Committee of the Immunology of Diabetes Society.

Authors:  R Mallone; S I Mannering; B M Brooks-Worrell; I Durinovic-Belló; C M Cilio; F S Wong; N C Schloot
Journal:  Clin Exp Immunol       Date:  2010-10-05       Impact factor: 4.330

Review 8.  World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonisation Project: IV. Tissue collection, processing, and storage in endometriosis research.

Authors:  Amelie Fassbender; Nilufer Rahmioglu; Allison F Vitonis; Paola Viganò; Linda C Giudice; Thomas M D'Hooghe; Lone Hummelshoj; G David Adamson; Christian M Becker; Stacey A Missmer; Krina T Zondervan
Journal:  Fertil Steril       Date:  2014-09-22       Impact factor: 7.329

9.  Storage Time and Urine Biomarker Levels in the ASSESS-AKI Study.

Authors:  Kathleen D Liu; Edward D Siew; W Brian Reeves; Jonathan Himmelfarb; Alan S Go; Chi-Yuan Hsu; Michael R Bennett; Prasad Devarajan; T Alp Ikizler; James S Kaufman; Paul L Kimmel; Vernon M Chinchilli; Chirag R Parikh
Journal:  PLoS One       Date:  2016-10-27       Impact factor: 3.240

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Journal:  mSystems       Date:  2016-05-03       Impact factor: 6.496

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  10 in total

1.  SpHincterotomy for Acute Recurrent Pancreatitis Randomized Trial: Rationale, Methodology, and Potential Implications.

Authors:  Gregory A Coté; Valerie L Durkalski-Mauldin; Jose Serrano; Erin Klintworth; April W Williams; Zobeida Cruz-Monserrate; Mustafa Arain; James L Buxbaum; Darwin L Conwell; Evan L Fogel; Martin L Freeman; Timothy B Gardner; Erwin van Geenen; J Royce Groce; Sreenivasa S Jonnalagadda; Rajesh N Keswani; Shyam Menon; Dana C Moffatt; Georgios I Papachristou; Andrew Ross; Paul R Tarnasky; Andrew Y Wang; C Mel Wilcox; Frank Hamilton; Dhiraj Yadav
Journal:  Pancreas       Date:  2019-09       Impact factor: 3.327

2.  PROspective Evaluation of Chronic Pancreatitis for EpidEmiologic and Translational StuDies: Rationale and Study Design for PROCEED From the Consortium for the Study of Chronic Pancreatitis, Diabetes, and Pancreatic Cancer.

Authors:  Dhiraj Yadav; Walter G Park; Evan L Fogel; Liang Li; Suresh T Chari; Ziding Feng; William E Fisher; Christopher E Forsmark; Christie Y Jeon; Aida Habtezion; Phil A Hart; Steven J Hughes; Mohamed O Othman; Jo Ann S Rinaudo; Stephen J Pandol; Temel Tirkes; Jose Serrano; Sudhir Srivastava; Stephen K Van Den Eeden; David C Whitcomb; Mark Topazian; Darwin L Conwell
Journal:  Pancreas       Date:  2018 Nov/Dec       Impact factor: 3.327

3.  Magnetic resonance imaging as a non-invasive method for the assessment of pancreatic fibrosis (MINIMAP): a comprehensive study design from the consortium for the study of chronic pancreatitis, diabetes, and pancreatic cancer.

Authors:  Temel Tirkes; Dhiraj Yadav; Darwin L Conwell; Paul R Territo; Xuandong Zhao; Sudhakar K Venkatesh; Arunark Kolipaka; Liang Li; Joseph R Pisegna; Stephen J Pandol; Walter G Park; Mark Topazian; Jose Serrano; Evan L Fogel
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4.  Standard Operating Procedures for Biospecimen Collection, Processing, and Storage: From the Type 1 Diabetes in Acute Pancreatitis Consortium.

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Journal:  Pancreas       Date:  2022-07-01       Impact factor: 3.243

5.  Biomarkers of Chronic Pancreatitis: A systematic literature review.

Authors:  Zobeida Cruz-Monserrate; Kristyn Gumpper; Valentina Pita; Phil A Hart; Christopher Forsmark; David C Whitcomb; Dhiraj Yadav; Richard T Waldron; Stephen Pandol; Hanno Steen; Vincent Anani; Natasha Kanwar; Santhi Swaroop Vege; Savi Appana; Liang Li; Jose Serrano; Jo Ann S Rinaudo; Mark Topazian; Darwin L Conwell
Journal:  Pancreatology       Date:  2021-01-22       Impact factor: 3.996

Review 6.  Artificial Intelligence and Early Detection of Pancreatic Cancer: 2020 Summative Review.

Authors:  Barbara Kenner; Suresh T Chari; David Kelsen; David S Klimstra; Stephen J Pandol; Michael Rosenthal; Anil K Rustgi; James A Taylor; Adam Yala; Noura Abul-Husn; Dana K Andersen; David Bernstein; Søren Brunak; Marcia Irene Canto; Yonina C Eldar; Elliot K Fishman; Julie Fleshman; Vay Liang W Go; Jane M Holt; Bruce Field; Ann Goldberg; William Hoos; Christine Iacobuzio-Donahue; Debiao Li; Graham Lidgard; Anirban Maitra; Lynn M Matrisian; Sung Poblete; Laura Rothschild; Chris Sander; Lawrence H Schwartz; Uri Shalit; Sudhir Srivastava; Brian Wolpin
Journal:  Pancreas       Date:  2021-03-01       Impact factor: 3.243

7.  Delayed Processing of Secretin-Induced Pancreas Fluid Influences the Quality and Integrity of Proteins and Nucleic Acids.

Authors:  Zobeida Cruz-Monserrate; Kristyn Gumpper; Sabrina Kaul; Niharika Badi; Samantha Terhorst; Kelly Dubay; Gregory B Lesinski; William Fisher; Amy McElhany; Luis F Lara; Somashekar Krishna; Thomas Mace; Natalia Higuita-Castro; Lilibeth Ortega-Pineda; Michael A Freitas; Alice Hinton; Dhiraj Yadav; Phil A Hart; Stephen J Pandol; Saima Ahmed; Benoit Fatou; Hanno Steen; Darwin L Conwell
Journal:  Pancreas       Date:  2021-01-01       Impact factor: 3.243

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Journal:  Front Mol Biosci       Date:  2022-08-26

Review 9.  Consortium for the study of chronic pancreatitis, diabetes, and pancreatic cancer: achievements and future directions.

Authors:  Stephen J Pandol; Chris E Forsmark
Journal:  Curr Opin Gastroenterol       Date:  2021-09-01       Impact factor: 2.741

10.  Biomarkers and Strategy to Detect Preinvasive and Early Pancreatic Cancer: State of the Field and the Impact of the EDRN.

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Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-06-12       Impact factor: 4.254

  10 in total

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