Literature DB >> 24022214

Linkage of data from diverse data sources (LDS): a data combination model provides clinical data of corresponding specimens in biobanking information system.

Okyaz Eminaga1, Enver Özgür, Axel Semjonow, Jan Herden, Ilgar Akbarov, Ali Tok, Udo Engelmann, Sebastian Wille.   

Abstract

To provide sufficient clinical data for corresponding specimens from diverse databases established before the implementation of biobanks for research purposes with respect to data privacy regulations. For this purpose, we developed a data model called "linkage of data from diverse data sources (LDS)". The data model was developed to merge clinical data from an existing local database with biospecimen repository data in our serum bank for uro-oncology. This concept combines two data models based on XML: the first stores information required to connect multiple data sources and retrieve clinical data, and the second provides a data architecture to acquire clinical and repository data. All data were anonymized and encrypted using the Advanced Encryption Standard. X.509 certificates were applied to secure data access. Furthermore, we tested the feasibility of implementing these models in the information management system for biobanking. The data concept can provide clinical and repository data of biospecimens. Only authorized receivers can access these data. Sensitive and personal data are not accessible by the data receivers. The data receiver cannot backtrack to the individual donor using the data model. The acquired data can be converted into a text file format supported by familiar statistical software. Supplementary tools were implemented to generate and view XML documents based on these data models. This data model provides an effective approach to distribute clinical and repository data from different data sources to enable data analysis compliant with data privacy regulations.

Entities:  

Mesh:

Year:  2013        PMID: 24022214     DOI: 10.1007/s10916-013-9975-y

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  31 in total

1.  Practice-based research--"Blue Highways" on the NIH roadmap.

Authors:  John M Westfall; James Mold; Lyle Fagnan
Journal:  JAMA       Date:  2007-01-24       Impact factor: 56.272

2.  EUSTAR biobanking: recommendations for the collection, storage and distribution of biospecimens in scleroderma research.

Authors:  Christian Beyer; Jörg H W Distler; Yannick Allanore; Martin Aringer; Jérôme Avouac; László Czirják; Maurizio Cutolo; Nemanja Damjanov; Francesco Del Galdo; Kim Fligelstone; Serena Guiducci; Otylia Kowal-Bielecka; Jacob M van Laar; Marco Martucci-Cerinic; Ulf Müller-Ladner; Gabriela Riemekasten; Ingo H Tarner; Alan Tyndall; Ann Tyrrell Kennedy; Gabriele Valentini; Serena Vettori; Ulrich A Walker; Christopher Denton; Oliver Distler
Journal:  Ann Rheum Dis       Date:  2011-02-01       Impact factor: 19.103

3.  The federated database--a basis for biobank-based post-genome studies, integrating phenome and genome data from 600,000 twin pairs in Europe.

Authors:  Juha Muilu; Leena Peltonen; Jan-Eric Litton
Journal:  Eur J Hum Genet       Date:  2007-05-09       Impact factor: 4.246

4.  Single source information systems to connect patient care and clinical research.

Authors:  Martin Dugas; Bernhard Breil; Volker Thiemann; Jens Lechtenbörger; Gottfried Vossen
Journal:  Stud Health Technol Inform       Date:  2009

5.  Biorepository standards and protocols for collecting, processing, and storing human tissues.

Authors:  Dean Troyer
Journal:  Methods Mol Biol       Date:  2008

Review 6.  New concepts of biobanks--strategic chance for uro-oncology.

Authors:  Peter J Goebell; Manuel M Morente
Journal:  Urol Oncol       Date:  2010 Jul-Aug       Impact factor: 3.498

7.  Biobanking human endometrial tissue and blood specimens: standard operating procedure and importance to reproductive biology research and diagnostic development.

Authors:  Elizabeth Sheldon; Kim Chi Vo; Ramsey A McIntire; Lusine Aghajanova; Zara Zelenko; Juan C Irwin; Linda C Giudice
Journal:  Fertil Steril       Date:  2011-03-02       Impact factor: 7.329

8.  Banking on the future: biobanking for "omics" approaches to biomarker discovery for Opisthorchis-induced cholangiocarcinoma in Thailand.

Authors:  Jason Mulvenna; Ponlapat Yonglitthipagon; Banchob Sripa; Paul J Brindley; Alex Loukas; Jeffrey M Bethony
Journal:  Parasitol Int       Date:  2011-08-09       Impact factor: 2.230

9.  Recruitment of newly diagnosed ovarian cancer patients proved challenging in a multicentre biobanking study.

Authors:  Nyaladzi Balogun; Aleksandra Gentry-Maharaj; Eva L Wozniak; Anita Lim; Andy Ryan; Susan J Ramus; Jeremy Ford; Matthew Burnell; Martin Widschwendter; Sue F Gessler; Simon A Gayther; Ian J Jacobs; Usha Menon
Journal:  J Clin Epidemiol       Date:  2010-11-13       Impact factor: 6.437

10.  HIS-based electronic documentation can significantly reduce the time from biopsy to final report for prostate tumours and supports quality management as well as clinical research.

Authors:  Bernhard Breil; Axel Semjonow; Martin Dugas
Journal:  BMC Med Inform Decis Mak       Date:  2009-01-20       Impact factor: 2.796

View more
  2 in total

1.  A new method based for diagnosis of breast cancer cells from microscopic images: DWEE--JHT.

Authors:  S Aytac Korkmaz; M Poyraz
Journal:  J Med Syst       Date:  2014-07-15       Impact factor: 4.460

2.  A new method based on Adaptive Discrete Wavelet Entropy Energy and Neural Network Classifier (ADWEENN) for recognition of urine cells from microscopic images independent of rotation and scaling.

Authors:  Derya Avci; Mehmet Kemal Leblebicioglu; Mustafa Poyraz; Esin Dogantekin
Journal:  J Med Syst       Date:  2014-02-04       Impact factor: 4.460

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.