Literature DB >> 19117530

Cis-regulatory elements and epigenetic changes control genomic rearrangements of the IgH locus.

Thomas Perlot1, Frederick W Alt.   

Abstract

Immunoglobulin variable region exons are assembled from discontinuous variable (V), diversity (D), and joining (J) segments by the process of V(D)J recombination. V(D)J rearrangements of the immunoglobulin heavy chain (IgH) locus are tightly controlled in a tissue-specific, ordered and allele-specific manner by regulating accessibility of V, D, and J segments to the recombination activating gene proteins which are the specific components of the V(D)J recombinase. In this review we discuss recent advances and established models brought forward to explain the mechanisms underlying accessibility control of V(D)J recombination, including research on germline transcripts, spatial organization, and chromatin modifications of the immunoglobulin heavy chain (IgH) locus. Furthermore, we review the functions of well-described and potential new cis-regulatory elements with regard to processes such as V(D)J recombination, allelic exclusion, and IgH class switch recombination.

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Year:  2008        PMID: 19117530      PMCID: PMC3115588          DOI: 10.1016/S0065-2776(08)00601-9

Source DB:  PubMed          Journal:  Adv Immunol        ISSN: 0065-2776            Impact factor:   3.543


  154 in total

Review 1.  The role of the non-homologous end-joining pathway in lymphocyte development.

Authors:  Sean Rooney; Jayanta Chaudhuri; Frederick W Alt
Journal:  Immunol Rev       Date:  2004-08       Impact factor: 12.988

Review 2.  Monoallelic gene expression: a repertoire of recurrent themes.

Authors:  Maya Goldmit; Yehudit Bergman
Journal:  Immunol Rev       Date:  2004-08       Impact factor: 12.988

3.  B cell-specific loss of histone 3 lysine 9 methylation in the V(H) locus depends on Pax5.

Authors:  Kristen Johnson; David L Pflugh; Duonan Yu; David G T Hesslein; Kuo-I Lin; Alfred L M Bothwell; Andrei Thomas-Tikhonenko; David G Schatz; Kathryn Calame
Journal:  Nat Immunol       Date:  2004-07-18       Impact factor: 25.606

Review 4.  The lingering enigma of the allelic exclusion mechanism.

Authors:  Raul Mostoslavsky; Frederick W Alt; Klaus Rajewsky
Journal:  Cell       Date:  2004-09-03       Impact factor: 41.582

Review 5.  Transcriptional control of early B cell development.

Authors:  Meinrad Busslinger
Journal:  Annu Rev Immunol       Date:  2004       Impact factor: 28.527

6.  Antisense intergenic transcription in V(D)J recombination.

Authors:  Daniel J Bolland; Andrew L Wood; Colette M Johnston; Sam F Bunting; Geoff Morgan; Lyubomira Chakalova; Peter J Fraser; Anne E Corcoran
Journal:  Nat Immunol       Date:  2004-04-25       Impact factor: 25.606

7.  An immunoglobulin heavy chain variable region gene is generated from three segments of DNA: VH, D and JH.

Authors:  P Early; H Huang; M Davis; K Calame; L Hood
Journal:  Cell       Date:  1980-04       Impact factor: 41.582

8.  The immunoglobulin IGHD gene locus in C57BL/6 mice.

Authors:  Jian Ye
Journal:  Immunogenetics       Date:  2004-08-18       Impact factor: 2.846

9.  Pax5 induces V-to-DJ rearrangements and locus contraction of the immunoglobulin heavy-chain gene.

Authors:  Martin Fuxa; Jane Skok; Abdallah Souabni; Giorgia Salvagiotto; Esther Roldan; Meinrad Busslinger
Journal:  Genes Dev       Date:  2004-02-15       Impact factor: 11.361

10.  Activity of multiple light chain genes in murine myeloma cells producing a single, functional light chain.

Authors:  F W Alt; V Enea; A L Bothwell; D Baltimore
Journal:  Cell       Date:  1980-08       Impact factor: 41.582

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  30 in total

1.  Histone H3K27ac separates active from poised enhancers and predicts developmental state.

Authors:  Menno P Creyghton; Albert W Cheng; G Grant Welstead; Tristan Kooistra; Bryce W Carey; Eveline J Steine; Jacob Hanna; Michael A Lodato; Garrett M Frampton; Phillip A Sharp; Laurie A Boyer; Richard A Young; Rudolf Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-24       Impact factor: 11.205

Review 2.  Immunoglobulin class-switch DNA recombination: induction, targeting and beyond.

Authors:  Zhenming Xu; Hong Zan; Egest J Pone; Thach Mai; Paolo Casali
Journal:  Nat Rev Immunol       Date:  2012-06-25       Impact factor: 53.106

Review 3.  Old questions, new tools: does next-generation sequencing hold the key to unraveling intestinal B-cell responses?

Authors:  O Pabst; H Hazanov; R Mehr
Journal:  Mucosal Immunol       Date:  2014-11-12       Impact factor: 7.313

4.  Epigenetic modifications of the VH region after DJH recombination in Pro-B cells.

Authors:  Yanying Dong; Caijun Wu; Xiaohui Zhao; Ping Zhang; Hua Zhang; Mingzhe Zheng; Shichang Li; Junna Jiao; Xiaozhuo Yu; Zhuangwei Lv; Yanhong Ji
Journal:  Immunology       Date:  2017-06-23       Impact factor: 7.397

5.  Two forms of loops generate the chromatin conformation of the immunoglobulin heavy-chain gene locus.

Authors:  Changying Guo; Tatiana Gerasimova; Haiping Hao; Irina Ivanova; Tirtha Chakraborty; Roza Selimyan; Eugene M Oltz; Ranjan Sen
Journal:  Cell       Date:  2011-10-06       Impact factor: 41.582

6.  Epigenetic control of immunity.

Authors:  Meinrad Busslinger; Alexander Tarakhovsky
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-06-02       Impact factor: 10.005

7.  CTCF-binding elements 1 and 2 in the Igh intergenic control region cooperatively regulate V(D)J recombination.

Authors:  Sherry G Lin; Chunguang Guo; Arthur Su; Yu Zhang; Frederick W Alt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

8.  Targeted chromatin profiling reveals novel enhancers in Ig H and Ig L chain Loci.

Authors:  Alexander V Predeus; Suhasni Gopalakrishnan; Yue Huang; Jun Tang; Ann J Feeney; Eugene M Oltz; Maxim N Artyomov
Journal:  J Immunol       Date:  2013-12-18       Impact factor: 5.422

9.  Role of the Igh intronic enhancer Eμ in clonal selection at the pre-B to immature B cell transition.

Authors:  Cheng Peng; Laurel A Eckhardt
Journal:  J Immunol       Date:  2013-09-20       Impact factor: 5.422

10.  Epigenetic regulation of antigen receptor gene rearrangement.

Authors:  Salvatore Spicuglia; Joaquin Zacarias-Cabeza; Aleksandra Pekowska; Pierre Ferrier
Journal:  F1000 Biol Rep       Date:  2010-03-25
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