Literature DB >> 19114106

Implementation of a flash-photolysis system for time-resolved cryo-electron microscopy.

Tanvir R Shaikh1, David Barnard, Xing Meng, Terence Wagenknecht.   

Abstract

We describe here the implementation of a flash-photolysis system for time-resolved cryo-electron microscopy. A previously designed computer-controlled cryo-plunging apparatus [White, H.D., Thirumurugan, K., Walker, M.L., Trinick, J., 2003. A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray. J. Struct. Biol. 144, 246-252] was used as a hardware platform, onto which a xenon flash lamp and liquid light pipe were mounted. The irradiation initiates a reaction through cleavage of the photolabile blocking group from a biologically active compound. The timespan between flashing and freezing in cryogen is on the order of milliseconds, and defines the fastest observable reaction. Blotting of excess fluid, which takes on the order of 1s, is done before irradiation and thus does not represent a rate-limiting step. A specimen-heating problem, identified by measurements with a thermocouple, was alleviated with the use of thick, aluminum-coated grids.

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Year:  2008        PMID: 19114106      PMCID: PMC2700038          DOI: 10.1016/j.jsb.2008.11.007

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  20 in total

1.  Three-dimensional structure of ryanodine receptor isoform three in two conformational states as visualized by cryo-electron microscopy.

Authors:  M R Sharma; L H Jeyakumar; S Fleischer; T Wagenknecht
Journal:  J Biol Chem       Date:  2000-03-31       Impact factor: 5.157

2.  A second generation apparatus for time-resolved electron cryo-microscopy using stepper motors and electrospray.

Authors:  H D White; K Thirumurugan; M L Walker; J Trinick
Journal:  J Struct Biol       Date:  2003 Oct-Nov       Impact factor: 2.867

3.  Time-resolved cryo-electron microscopic study of the dissociation of actomyosin induced by photolysis of photolabile nucleotides.

Authors:  J F Ménétret; W Hofmann; R R Schröder; G Rapp; R S Goody
Journal:  J Mol Biol       Date:  1991-05-20       Impact factor: 5.469

4.  Nucleotide binding and GTP hydrolysis by elongation factor Tu from Thermus thermophilus as monitored by proton NMR.

Authors:  S Limmer; C O Reiser; N K Schirmer; N W Grillenbeck; M Sprinzl
Journal:  Biochemistry       Date:  1992-03-24       Impact factor: 3.162

5.  Caged compounds: photorelease technology for control of cellular chemistry and physiology.

Authors:  Graham C R Ellis-Davies
Journal:  Nat Methods       Date:  2007-08       Impact factor: 28.547

6.  Development and application of caged calcium.

Authors:  Graham C R Ellis-Davies
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

7.  The design and use of a simple device for rapid quench-freezing of biological samples.

Authors:  D A Handley; J T Alexander; S Chien
Journal:  J Microsc       Date:  1981-03       Impact factor: 1.758

8.  Coupling of GTP hydrolysis by elongation factor G to translocation and factor recycling on the ribosome.

Authors:  Vladimir I Katunin; Andreas Savelsbergh; Marina V Rodnina; Wolfgang Wintermeyer
Journal:  Biochemistry       Date:  2002-10-22       Impact factor: 3.162

9.  Photolabile chelators for the rapid photorelease of divalent cations.

Authors:  J H Kaplan; G C Ellis-Davies
Journal:  Proc Natl Acad Sci U S A       Date:  1988-09       Impact factor: 11.205

10.  Biochemical and crystallographic characterization of a complex of c-Ha-ras p21 and caged GTP with flash photolysis.

Authors:  I Schlichting; G Rapp; J John; A Wittinghofer; E F Pai; R S Goody
Journal:  Proc Natl Acad Sci U S A       Date:  1989-10       Impact factor: 11.205

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  13 in total

Review 1.  Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule.

Authors:  Bo Chen; Joachim Frank
Journal:  Microscopy (Oxf)       Date:  2015-10-31       Impact factor: 1.571

Review 2.  Enabling direct nanoscale observations of biological reactions with dynamic TEM.

Authors:  James E Evans; Nigel D Browning
Journal:  Microscopy (Oxf)       Date:  2013-01-12       Impact factor: 1.571

3.  Initial bridges between two ribosomal subunits are formed within 9.4 milliseconds, as studied by time-resolved cryo-EM.

Authors:  Tanvir R Shaikh; Aymen S Yassin; Zonghuan Lu; David Barnard; Xing Meng; Toh-Ming Lu; Terence Wagenknecht; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

Review 4.  Structure and dynamics of a processive Brownian motor: the translating ribosome.

Authors:  Joachim Frank; Ruben L Gonzalez
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

5.  Monolithic microfluidic mixing-spraying devices for time-resolved cryo-electron microscopy.

Authors:  Zonghuan Lu; Tanvir R Shaikh; David Barnard; Xing Meng; Hisham Mohamed; Aymen Yassin; Carmen A Mannella; Rajendra K Agrawal; Toh-Ming Lu; Terence Wagenknecht
Journal:  J Struct Biol       Date:  2009-08-14       Impact factor: 2.867

6.  Story in a sample-the potential (and limitations) of cryo-electron microscopy applied to molecular machines.

Authors:  Joachim Frank
Journal:  Biopolymers       Date:  2013-11       Impact factor: 2.505

7.  Kinetic regulation of multi-ligand binding proteins.

Authors:  Diana V Salakhieva; Ildar I Sadreev; Michael Z Q Chen; Yoshinori Umezawa; Aleksandr I Evstifeev; Gavin I Welsh; Nikolay V Kotov
Journal:  BMC Syst Biol       Date:  2016-04-18

Review 8.  Progress towards an optimal specimen support for electron cryomicroscopy.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Curr Opin Struct Biol       Date:  2016-01-14       Impact factor: 6.809

9.  A precision cryostat design for manual and semi-automated cryo-plunge instruments.

Authors:  Christopher J Russo; Steve Scotcher; Martin Kyte
Journal:  Rev Sci Instrum       Date:  2016-11       Impact factor: 1.523

10.  In situ Microfluidic Cryofixation for Cryo Focused Ion Beam Milling and Cryo Electron Tomography.

Authors:  Marie Fuest; Miroslava Schaffer; Giovanni Marco Nocera; Rodrigo I Galilea-Kleinsteuber; Jan-Erik Messling; Michael Heymann; Jürgen M Plitzko; Thomas P Burg
Journal:  Sci Rep       Date:  2019-12-13       Impact factor: 4.379

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